Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27350 and BWI76_RS27355 are separated by 198 nucleotides BWI76_RS27355 and BWI76_RS27360 are separated by 20 nucleotides BWI76_RS27360 and BWI76_RS27365 are separated by 216 nucleotides
BWI76_RS27350: BWI76_RS27350 - hypothetical protein, at 5,677,498 to 5,678,175
_RS27350
BWI76_RS27355: BWI76_RS27355 - 50S ribosomal protein L33, at 5,678,374 to 5,678,541
_RS27355
BWI76_RS27360: BWI76_RS27360 - 50S ribosomal protein L28, at 5,678,562 to 5,678,798
_RS27360
BWI76_RS27365: BWI76_RS27365 - hypothetical protein, at 5,679,015 to 5,679,680
_RS27365
Position (kb) 5678
5679 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.627 kb on - strand, within BWI76_RS27350 at 5677.660 kb on - strand, within BWI76_RS27350 at 5677.739 kb on - strand, within BWI76_RS27350 at 5677.749 kb on - strand, within BWI76_RS27350 at 5677.826 kb on + strand, within BWI76_RS27350 at 5677.890 kb on + strand, within BWI76_RS27350 at 5677.964 kb on - strand, within BWI76_RS27350 at 5678.120 kb on + strand at 5678.121 kb on - strand at 5678.130 kb on + strand at 5678.321 kb on - strand at 5679.146 kb on + strand, within BWI76_RS27365 at 5679.146 kb on + strand, within BWI76_RS27365 at 5679.188 kb on - strand, within BWI76_RS27365 at 5679.397 kb on + strand, within BWI76_RS27365 at 5679.447 kb on - strand, within BWI76_RS27365 at 5679.480 kb on - strand, within BWI76_RS27365 at 5679.605 kb on + strand, within BWI76_RS27365 at 5679.711 kb on - strand at 5679.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,677,627 - BWI76_RS27350 0.19 -3.0 5,677,627 - BWI76_RS27350 0.19 +1.3 5,677,660 - BWI76_RS27350 0.24 -0.3 5,677,739 - BWI76_RS27350 0.36 -0.4 5,677,749 - BWI76_RS27350 0.37 -0.4 5,677,826 + BWI76_RS27350 0.48 -0.7 5,677,890 + BWI76_RS27350 0.58 -0.3 5,677,964 - BWI76_RS27350 0.69 +0.3 5,678,120 + +0.7 5,678,121 - +0.0 5,678,130 + +1.1 5,678,321 - +0.1 5,679,146 + BWI76_RS27365 0.20 +0.0 5,679,146 + BWI76_RS27365 0.20 +1.3 5,679,188 - BWI76_RS27365 0.26 -1.0 5,679,397 + BWI76_RS27365 0.57 +0.4 5,679,447 - BWI76_RS27365 0.65 -1.0 5,679,480 - BWI76_RS27365 0.70 -0.4 5,679,605 + BWI76_RS27365 0.89 -0.3 5,679,711 - +0.7 5,679,755 + -0.0
Or see this region's nucleotide sequence