Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21500 and BWI76_RS21505 are separated by 54 nucleotides BWI76_RS21505 and BWI76_RS21510 are separated by 120 nucleotides BWI76_RS21510 and BWI76_RS21515 are separated by 39 nucleotides
BWI76_RS21500: BWI76_RS21500 - membrane protein, at 4,503,460 to 4,504,830
_RS21500
BWI76_RS21505: BWI76_RS21505 - hypothetical protein, at 4,504,885 to 4,505,322
_RS21505
BWI76_RS21510: BWI76_RS21510 - 50S ribosomal protein L19, at 4,505,443 to 4,505,790
_RS21510
BWI76_RS21515: BWI76_RS21515 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 4,505,830 to 4,506,597
_RS21515
Position (kb) 4504
4505
4506 Strain fitness (log2 ratio) -1
0
1 at 4503.891 kb on + strand, within BWI76_RS21500 at 4504.376 kb on + strand, within BWI76_RS21500 at 4504.688 kb on - strand, within BWI76_RS21500 at 4504.802 kb on - strand at 4504.808 kb on - strand at 4504.940 kb on - strand, within BWI76_RS21505
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,503,891 + BWI76_RS21500 0.31 -1.0 4,504,376 + BWI76_RS21500 0.67 +1.2 4,504,688 - BWI76_RS21500 0.90 -0.4 4,504,802 - +0.2 4,504,808 - +1.0 4,504,940 - BWI76_RS21505 0.13 +1.2
Or see this region's nucleotide sequence