Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19975 and BWI76_RS19980 are separated by 23 nucleotides BWI76_RS19980 and BWI76_RS19985 are separated by 14 nucleotides BWI76_RS19985 and BWI76_RS19990 are separated by 52 nucleotides
BWI76_RS19975: BWI76_RS19975 - sn-glycerol-3-phosphate dehydrogenase subunit C, at 4,184,597 to 4,185,776
_RS19975
BWI76_RS19980: BWI76_RS19980 - 2-keto-3-deoxy-L-rhamnonate aldolase, at 4,185,800 to 4,186,603
_RS19980
BWI76_RS19985: BWI76_RS19985 - MFS transporter, at 4,186,618 to 4,187,907
_RS19985
BWI76_RS19990: BWI76_RS19990 - L-rhamnonate dehydratase, at 4,187,960 to 4,189,165
_RS19990
Position (kb) 4186
4187
4188 Strain fitness (log2 ratio) -1
0
1
2
3 at 4185.863 kb on - strand at 4185.920 kb on + strand, within BWI76_RS19980 at 4186.368 kb on - strand, within BWI76_RS19980 at 4186.536 kb on - strand at 4186.843 kb on - strand, within BWI76_RS19985 at 4186.864 kb on - strand, within BWI76_RS19985 at 4187.033 kb on + strand, within BWI76_RS19985 at 4187.033 kb on + strand, within BWI76_RS19985 at 4187.905 kb on - strand at 4187.934 kb on + strand at 4187.942 kb on - strand at 4187.944 kb on + strand at 4188.127 kb on - strand, within BWI76_RS19990 at 4188.325 kb on - strand, within BWI76_RS19990 at 4188.347 kb on + strand, within BWI76_RS19990 at 4188.490 kb on + strand, within BWI76_RS19990 at 4188.834 kb on - strand, within BWI76_RS19990
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,185,863 - +1.4 4,185,920 + BWI76_RS19980 0.15 -0.8 4,186,368 - BWI76_RS19980 0.71 +0.4 4,186,536 - -0.1 4,186,843 - BWI76_RS19985 0.17 +0.7 4,186,864 - BWI76_RS19985 0.19 +0.1 4,187,033 + BWI76_RS19985 0.32 -1.2 4,187,033 + BWI76_RS19985 0.32 +2.9 4,187,905 - +0.9 4,187,934 + +1.8 4,187,942 - +0.4 4,187,944 + +0.2 4,188,127 - BWI76_RS19990 0.14 -0.9 4,188,325 - BWI76_RS19990 0.30 +0.3 4,188,347 + BWI76_RS19990 0.32 -1.2 4,188,490 + BWI76_RS19990 0.44 -1.0 4,188,834 - BWI76_RS19990 0.72 -0.0
Or see this region's nucleotide sequence