Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18815 and BWI76_RS18820 are separated by 55 nucleotides BWI76_RS18820 and BWI76_RS18825 are separated by 39 nucleotides BWI76_RS18825 and BWI76_RS18830 are separated by 10 nucleotides
BWI76_RS18815: BWI76_RS18815 - nitrogenase molybdenum-iron protein alpha chain, at 3,902,289 to 3,903,737
_RS18815
BWI76_RS18820: BWI76_RS18820 - nitrogenase molybdenum-iron protein subunit beta, at 3,903,793 to 3,905,355
_RS18820
BWI76_RS18825: BWI76_RS18825 - protein NifT, at 3,905,395 to 3,905,613
_RS18825
BWI76_RS18830: BWI76_RS18830 - protein NifY, at 3,905,624 to 3,906,286
_RS18830
Position (kb)
3903
3904
3905
3906 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3903.425 kb on - strand, within BWI76_RS18815 at 3903.471 kb on - strand, within BWI76_RS18815 at 3903.622 kb on + strand at 3903.641 kb on - strand at 3903.689 kb on - strand at 3903.864 kb on - strand at 3904.061 kb on + strand, within BWI76_RS18820 at 3904.061 kb on + strand, within BWI76_RS18820 at 3904.069 kb on - strand, within BWI76_RS18820 at 3904.936 kb on + strand, within BWI76_RS18820 at 3905.033 kb on - strand, within BWI76_RS18820 at 3905.256 kb on - strand at 3905.274 kb on + strand at 3905.675 kb on + strand at 3905.848 kb on - strand, within BWI76_RS18830 at 3905.885 kb on + strand, within BWI76_RS18830
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,903,425 - BWI76_RS18815 0.78 -2.4 3,903,471 - BWI76_RS18815 0.82 +0.4 3,903,622 + +0.0 3,903,641 - -0.6 3,903,689 - -2.3 3,903,864 - -1.0 3,904,061 + BWI76_RS18820 0.17 +1.0 3,904,061 + BWI76_RS18820 0.17 +0.4 3,904,069 - BWI76_RS18820 0.18 +0.5 3,904,936 + BWI76_RS18820 0.73 +2.4 3,905,033 - BWI76_RS18820 0.79 +0.3 3,905,256 - -0.6 3,905,274 + +0.4 3,905,675 + +0.2 3,905,848 - BWI76_RS18830 0.34 +0.5 3,905,885 + BWI76_RS18830 0.39 -0.1
Or see this region's nucleotide sequence