Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18735 and BWI76_RS18740 are separated by 49 nucleotides BWI76_RS18740 and BWI76_RS18745 are separated by 185 nucleotides BWI76_RS18745 and BWI76_RS18750 are separated by 131 nucleotides BWI76_RS18750 and BWI76_RS18755 are separated by 39 nucleotides
BWI76_RS18735: BWI76_RS18735 - tautomerase family protein, at 3,884,275 to 3,884,664
_RS18735
BWI76_RS18740: BWI76_RS18740 - HPP family protein, at 3,884,714 to 3,885,445
_RS18740
BWI76_RS18745: BWI76_RS18745 - adenosylhomocysteinase, at 3,885,631 to 3,886,740
_RS18745
BWI76_RS18750: BWI76_RS18750 - adenosylcobinamide-GDP ribazoletransferase, at 3,886,872 to 3,887,612
_RS18750
BWI76_RS18755: BWI76_RS18755 - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 3,887,652 to 3,887,885
_RS18755
Position (kb)
3885
3886
3887 Strain fitness (log2 ratio)
-1
0
1 at 3884.667 kb on - strand at 3884.688 kb on + strand at 3884.876 kb on - strand, within BWI76_RS18740 at 3884.876 kb on - strand, within BWI76_RS18740 at 3885.111 kb on + strand, within BWI76_RS18740 at 3885.158 kb on + strand, within BWI76_RS18740 at 3885.192 kb on + strand, within BWI76_RS18740 at 3885.591 kb on - strand at 3885.673 kb on + strand at 3885.741 kb on - strand at 3885.838 kb on + strand, within BWI76_RS18745 at 3886.136 kb on - strand, within BWI76_RS18745 at 3886.851 kb on - strand at 3887.025 kb on + strand, within BWI76_RS18750 at 3887.114 kb on - strand, within BWI76_RS18750 at 3887.695 kb on + strand, within BWI76_RS18755
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,884,667 - +1.2 3,884,688 + +0.1 3,884,876 - BWI76_RS18740 0.22 -1.4 3,884,876 - BWI76_RS18740 0.22 -1.4 3,885,111 + BWI76_RS18740 0.54 -1.2 3,885,158 + BWI76_RS18740 0.61 -0.0 3,885,192 + BWI76_RS18740 0.65 -1.3 3,885,591 - +0.6 3,885,673 + +0.2 3,885,741 - -0.4 3,885,838 + BWI76_RS18745 0.19 -0.5 3,886,136 - BWI76_RS18745 0.45 -1.5 3,886,851 - +1.5 3,887,025 + BWI76_RS18750 0.21 -1.3 3,887,114 - BWI76_RS18750 0.33 -1.4 3,887,695 + BWI76_RS18755 0.18 +0.2
Or see this region's nucleotide sequence