Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18720 and BWI76_RS18725 are separated by 9 nucleotides BWI76_RS18725 and BWI76_RS18730 overlap by 8 nucleotides BWI76_RS18730 and BWI76_RS18735 are separated by 114 nucleotides BWI76_RS18735 and BWI76_RS18740 are separated by 49 nucleotides
BWI76_RS18720: BWI76_RS18720 - MFS transporter, at 3,881,175 to 3,882,509
_RS18720
BWI76_RS18725: BWI76_RS18725 - hypothetical protein, at 3,882,519 to 3,883,250
_RS18725
BWI76_RS18730: BWI76_RS18730 - LysR family transcriptional regulator, at 3,883,243 to 3,884,160
_RS18730
BWI76_RS18735: BWI76_RS18735 - tautomerase family protein, at 3,884,275 to 3,884,664
_RS18735
BWI76_RS18740: BWI76_RS18740 - HPP family protein, at 3,884,714 to 3,885,445
_RS18740
Position (kb)
3883
3884
3885 Strain fitness (log2 ratio)
-1
0
1 at 3882.253 kb on + strand, within BWI76_RS18720 at 3882.660 kb on + strand, within BWI76_RS18725 at 3883.010 kb on + strand, within BWI76_RS18725 at 3883.032 kb on + strand, within BWI76_RS18725 at 3883.090 kb on - strand, within BWI76_RS18725 at 3883.320 kb on + strand at 3883.438 kb on + strand, within BWI76_RS18730 at 3883.502 kb on - strand, within BWI76_RS18730 at 3883.556 kb on + strand, within BWI76_RS18730 at 3884.076 kb on - strand at 3884.224 kb on + strand at 3884.470 kb on - strand, within BWI76_RS18735 at 3884.485 kb on + strand, within BWI76_RS18735 at 3884.489 kb on + strand, within BWI76_RS18735 at 3884.492 kb on - strand, within BWI76_RS18735 at 3884.667 kb on - strand at 3884.688 kb on + strand at 3884.876 kb on - strand, within BWI76_RS18740 at 3884.876 kb on - strand, within BWI76_RS18740 at 3885.111 kb on + strand, within BWI76_RS18740 at 3885.158 kb on + strand, within BWI76_RS18740
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,882,253 + BWI76_RS18720 0.81 -0.4 3,882,660 + BWI76_RS18725 0.19 -1.0 3,883,010 + BWI76_RS18725 0.67 -0.0 3,883,032 + BWI76_RS18725 0.70 +0.8 3,883,090 - BWI76_RS18725 0.78 +0.6 3,883,320 + +0.2 3,883,438 + BWI76_RS18730 0.21 +0.0 3,883,502 - BWI76_RS18730 0.28 +1.4 3,883,556 + BWI76_RS18730 0.34 +0.6 3,884,076 - +0.8 3,884,224 + +0.4 3,884,470 - BWI76_RS18735 0.50 +0.1 3,884,485 + BWI76_RS18735 0.54 +0.8 3,884,489 + BWI76_RS18735 0.55 +1.1 3,884,492 - BWI76_RS18735 0.56 +0.2 3,884,667 - +1.2 3,884,688 + +0.1 3,884,876 - BWI76_RS18740 0.22 -1.4 3,884,876 - BWI76_RS18740 0.22 -1.4 3,885,111 + BWI76_RS18740 0.54 -1.2 3,885,158 + BWI76_RS18740 0.61 -0.0
Or see this region's nucleotide sequence