Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16370 and BWI76_RS16375 are separated by 10 nucleotides BWI76_RS16375 and BWI76_RS16380 are separated by 3 nucleotides BWI76_RS16380 and BWI76_RS16385 are separated by 1 nucleotides
BWI76_RS16370: BWI76_RS16370 - electron transport complex subunit D, at 3,396,815 to 3,397,867
_RS16370
BWI76_RS16375: BWI76_RS16375 - electron transport complex subunit G, at 3,397,878 to 3,398,498
_RS16375
BWI76_RS16380: BWI76_RS16380 - electron transport complex subunit RsxE, at 3,398,502 to 3,399,200
_RS16380
BWI76_RS16385: BWI76_RS16385 - endonuclease III, at 3,399,202 to 3,399,837
_RS16385
Position (kb)
3397
3398
3399 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3396.996 kb on + strand, within BWI76_RS16370 at 3396.996 kb on + strand, within BWI76_RS16370 at 3397.308 kb on + strand, within BWI76_RS16370 at 3397.364 kb on + strand, within BWI76_RS16370 at 3397.622 kb on + strand, within BWI76_RS16370 at 3397.991 kb on - strand, within BWI76_RS16375 at 3398.080 kb on + strand, within BWI76_RS16375 at 3398.406 kb on - strand, within BWI76_RS16375 at 3398.447 kb on - strand at 3398.628 kb on - strand, within BWI76_RS16380 at 3398.759 kb on + strand, within BWI76_RS16380
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,396,996 + BWI76_RS16370 0.17 +1.8 3,396,996 + BWI76_RS16370 0.17 -1.9 3,397,308 + BWI76_RS16370 0.47 +0.3 3,397,364 + BWI76_RS16370 0.52 -0.0 3,397,622 + BWI76_RS16370 0.77 +0.1 3,397,991 - BWI76_RS16375 0.18 -2.3 3,398,080 + BWI76_RS16375 0.33 -0.3 3,398,406 - BWI76_RS16375 0.85 -2.0 3,398,447 - +0.1 3,398,628 - BWI76_RS16380 0.18 +2.1 3,398,759 + BWI76_RS16380 0.37 -1.5
Or see this region's nucleotide sequence