Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16200

Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16190 and BWI76_RS16195 are separated by 127 nucleotidesBWI76_RS16195 and BWI76_RS16200 are separated by 145 nucleotidesBWI76_RS16200 and BWI76_RS16205 are separated by 10 nucleotides BWI76_RS16190: BWI76_RS16190 - universal stress protein UspE, at 3,359,475 to 3,360,425 _RS16190 BWI76_RS16195: BWI76_RS16195 - hypothetical protein, at 3,360,553 to 3,360,741 _RS16195 BWI76_RS16200: BWI76_RS16200 - NAD(P) transhydrogenase subunit beta, at 3,360,887 to 3,362,275 _RS16200 BWI76_RS16205: BWI76_RS16205 - NAD(P) transhydrogenase subunit alpha, at 3,362,286 to 3,363,815 _RS16205 Position (kb) 3360 3361 3362 3363Strain fitness (log2 ratio) -2 -1 0 1at 3360.571 kb on - strandat 3360.590 kb on + strand, within BWI76_RS16195at 3360.681 kb on - strand, within BWI76_RS16195at 3360.892 kb on - strandat 3361.117 kb on + strand, within BWI76_RS16200at 3361.714 kb on + strand, within BWI76_RS16200at 3361.912 kb on + strand, within BWI76_RS16200at 3361.920 kb on - strand, within BWI76_RS16200at 3362.174 kb on - strandat 3362.182 kb on + strandat 3362.246 kb on + strandat 3362.250 kb on - strandat 3362.283 kb on + strandat 3362.291 kb on - strandat 3362.404 kb on + strandat 3362.457 kb on + strand, within BWI76_RS16205at 3362.797 kb on + strand, within BWI76_RS16205at 3363.199 kb on + strand, within BWI76_RS16205

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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3,360,571 - +0.2
3,360,590 + BWI76_RS16195 0.20 -1.2
3,360,681 - BWI76_RS16195 0.68 -0.6
3,360,892 - -0.3
3,361,117 + BWI76_RS16200 0.17 -2.0
3,361,714 + BWI76_RS16200 0.60 +1.7
3,361,912 + BWI76_RS16200 0.74 -1.9
3,361,920 - BWI76_RS16200 0.74 +1.1
3,362,174 - +1.1
3,362,182 + +1.1
3,362,246 + +0.4
3,362,250 - +1.0
3,362,283 + +0.0
3,362,291 - -1.5
3,362,404 + -2.0
3,362,457 + BWI76_RS16205 0.11 +1.3
3,362,797 + BWI76_RS16205 0.33 +1.0
3,363,199 + BWI76_RS16205 0.60 +0.4

Or see this region's nucleotide sequence