Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14975 and BWI76_RS14980 overlap by 4 nucleotides BWI76_RS14980 and BWI76_RS14985 are separated by 4 nucleotides BWI76_RS14985 and BWI76_RS14990 overlap by 11 nucleotides BWI76_RS14990 and BWI76_RS14995 are separated by 9 nucleotides
BWI76_RS14975: BWI76_RS14975 - glyoxalase-like domain protein, at 3,138,874 to 3,139,629
_RS14975
BWI76_RS14980: BWI76_RS14980 - hypothetical protein, at 3,139,626 to 3,140,156
_RS14980
BWI76_RS14985: BWI76_RS14985 - amino acid ABC transporter substrate-binding protein, at 3,140,161 to 3,141,003
_RS14985
BWI76_RS14990: BWI76_RS14990 - polar amino acid ABC transporter permease, at 3,140,993 to 3,141,745
_RS14990
BWI76_RS14995: BWI76_RS14995 - amino acid ABC transporter permease, at 3,141,755 to 3,142,453
_RS14995
Position (kb)
3140
3141
3142 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3139.204 kb on + strand, within BWI76_RS14975 at 3139.430 kb on + strand, within BWI76_RS14975 at 3139.477 kb on + strand, within BWI76_RS14975 at 3139.643 kb on + strand at 3140.090 kb on + strand, within BWI76_RS14980 at 3140.098 kb on - strand, within BWI76_RS14980 at 3140.122 kb on + strand at 3140.174 kb on + strand at 3140.207 kb on + strand at 3140.210 kb on - strand at 3140.222 kb on - strand at 3140.285 kb on - strand, within BWI76_RS14985 at 3140.558 kb on + strand, within BWI76_RS14985 at 3140.593 kb on - strand, within BWI76_RS14985 at 3140.667 kb on + strand, within BWI76_RS14985 at 3140.703 kb on - strand, within BWI76_RS14985 at 3140.714 kb on - strand, within BWI76_RS14985 at 3140.735 kb on - strand, within BWI76_RS14985 at 3140.736 kb on - strand, within BWI76_RS14985 at 3140.828 kb on - strand, within BWI76_RS14985 at 3140.894 kb on - strand, within BWI76_RS14985 at 3141.068 kb on + strand at 3141.076 kb on + strand, within BWI76_RS14990 at 3141.076 kb on + strand, within BWI76_RS14990 at 3141.084 kb on - strand, within BWI76_RS14990 at 3141.086 kb on + strand, within BWI76_RS14990 at 3141.089 kb on - strand, within BWI76_RS14990 at 3141.093 kb on + strand, within BWI76_RS14990 at 3141.094 kb on - strand, within BWI76_RS14990 at 3141.099 kb on - strand, within BWI76_RS14990 at 3141.118 kb on + strand, within BWI76_RS14990 at 3141.141 kb on - strand, within BWI76_RS14990 at 3141.148 kb on - strand, within BWI76_RS14990 at 3141.157 kb on + strand, within BWI76_RS14990 at 3141.215 kb on + strand, within BWI76_RS14990 at 3141.216 kb on + strand, within BWI76_RS14990 at 3141.216 kb on + strand, within BWI76_RS14990 at 3141.216 kb on + strand, within BWI76_RS14990 at 3141.216 kb on + strand, within BWI76_RS14990 at 3141.216 kb on + strand, within BWI76_RS14990 at 3141.216 kb on + strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.224 kb on - strand, within BWI76_RS14990 at 3141.275 kb on + strand, within BWI76_RS14990 at 3141.314 kb on - strand, within BWI76_RS14990 at 3141.465 kb on - strand, within BWI76_RS14990 at 3141.472 kb on - strand, within BWI76_RS14990 at 3141.476 kb on - strand, within BWI76_RS14990 at 3141.515 kb on - strand, within BWI76_RS14990 at 3141.561 kb on - strand, within BWI76_RS14990 at 3141.570 kb on - strand, within BWI76_RS14990 at 3141.572 kb on + strand, within BWI76_RS14990 at 3141.626 kb on + strand at 3141.626 kb on + strand, within BWI76_RS14990 at 3141.626 kb on + strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.634 kb on - strand, within BWI76_RS14990 at 3141.636 kb on + strand, within BWI76_RS14990 at 3141.639 kb on - strand, within BWI76_RS14990 at 3141.644 kb on - strand, within BWI76_RS14990 at 3141.644 kb on - strand, within BWI76_RS14990 at 3141.644 kb on - strand, within BWI76_RS14990 at 3141.644 kb on - strand, within BWI76_RS14990 at 3141.644 kb on - strand, within BWI76_RS14990 at 3141.644 kb on - strand, within BWI76_RS14990 at 3141.646 kb on - strand, within BWI76_RS14990 at 3141.654 kb on - strand at 3141.739 kb on - strand at 3141.740 kb on + strand at 3141.758 kb on + strand at 3141.766 kb on - strand at 3141.853 kb on - strand, within BWI76_RS14995 at 3141.853 kb on - strand, within BWI76_RS14995 at 3141.863 kb on - strand, within BWI76_RS14995 at 3141.868 kb on - strand, within BWI76_RS14995 at 3141.870 kb on - strand, within BWI76_RS14995 at 3141.935 kb on - strand, within BWI76_RS14995 at 3141.935 kb on - strand, within BWI76_RS14995
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 3,139,204 + BWI76_RS14975 0.44 -0.7 3,139,430 + BWI76_RS14975 0.74 +0.7 3,139,477 + BWI76_RS14975 0.80 -2.5 3,139,643 + +1.0 3,140,090 + BWI76_RS14980 0.87 -2.0 3,140,098 - BWI76_RS14980 0.89 +0.7 3,140,122 + -1.8 3,140,174 + +1.3 3,140,207 + -1.2 3,140,210 - -0.4 3,140,222 - -1.9 3,140,285 - BWI76_RS14985 0.15 +1.1 3,140,558 + BWI76_RS14985 0.47 -1.8 3,140,593 - BWI76_RS14985 0.51 +1.0 3,140,667 + BWI76_RS14985 0.60 -0.2 3,140,703 - BWI76_RS14985 0.64 -1.1 3,140,714 - BWI76_RS14985 0.66 +0.8 3,140,735 - BWI76_RS14985 0.68 +1.5 3,140,736 - BWI76_RS14985 0.68 +1.4 3,140,828 - BWI76_RS14985 0.79 +0.4 3,140,894 - BWI76_RS14985 0.87 +0.3 3,141,068 + +0.1 3,141,076 + BWI76_RS14990 0.11 -0.1 3,141,076 + BWI76_RS14990 0.11 -0.7 3,141,084 - BWI76_RS14990 0.12 -0.3 3,141,086 + BWI76_RS14990 0.12 -1.4 3,141,089 - BWI76_RS14990 0.13 +0.2 3,141,093 + BWI76_RS14990 0.13 -1.8 3,141,094 - BWI76_RS14990 0.13 -0.4 3,141,099 - BWI76_RS14990 0.14 +0.3 3,141,118 + BWI76_RS14990 0.17 -2.1 3,141,141 - BWI76_RS14990 0.20 -0.4 3,141,148 - BWI76_RS14990 0.21 +0.0 3,141,157 + BWI76_RS14990 0.22 +2.2 3,141,215 + BWI76_RS14990 0.29 -0.4 3,141,216 + BWI76_RS14990 0.30 +0.4 3,141,216 + BWI76_RS14990 0.30 +1.4 3,141,216 + BWI76_RS14990 0.30 -1.3 3,141,216 + BWI76_RS14990 0.30 -0.1 3,141,216 + BWI76_RS14990 0.30 -0.8 3,141,216 + BWI76_RS14990 0.30 -0.4 3,141,224 - BWI76_RS14990 0.31 +0.3 3,141,224 - BWI76_RS14990 0.31 -0.4 3,141,224 - BWI76_RS14990 0.31 +0.1 3,141,224 - BWI76_RS14990 0.31 -2.2 3,141,224 - BWI76_RS14990 0.31 +1.0 3,141,224 - BWI76_RS14990 0.31 -1.6 3,141,224 - BWI76_RS14990 0.31 -2.7 3,141,224 - BWI76_RS14990 0.31 -1.6 3,141,224 - BWI76_RS14990 0.31 -0.1 3,141,275 + BWI76_RS14990 0.37 -0.7 3,141,314 - BWI76_RS14990 0.43 -0.8 3,141,465 - BWI76_RS14990 0.63 +0.5 3,141,472 - BWI76_RS14990 0.64 -0.9 3,141,476 - BWI76_RS14990 0.64 -0.8 3,141,515 - BWI76_RS14990 0.69 +0.6 3,141,561 - BWI76_RS14990 0.75 -0.8 3,141,570 - BWI76_RS14990 0.77 +0.5 3,141,572 + BWI76_RS14990 0.77 +2.0 3,141,626 + -0.4 3,141,626 + BWI76_RS14990 0.84 -1.0 3,141,626 + BWI76_RS14990 0.84 +1.2 3,141,634 - BWI76_RS14990 0.85 +0.1 3,141,634 - BWI76_RS14990 0.85 +0.0 3,141,634 - BWI76_RS14990 0.85 -0.1 3,141,634 - BWI76_RS14990 0.85 +0.8 3,141,634 - BWI76_RS14990 0.85 -1.2 3,141,634 - BWI76_RS14990 0.85 -0.3 3,141,634 - BWI76_RS14990 0.85 -0.2 3,141,634 - BWI76_RS14990 0.85 +0.9 3,141,634 - BWI76_RS14990 0.85 +0.6 3,141,634 - BWI76_RS14990 0.85 -1.5 3,141,634 - BWI76_RS14990 0.85 -0.5 3,141,634 - BWI76_RS14990 0.85 +0.1 3,141,634 - BWI76_RS14990 0.85 +0.3 3,141,634 - BWI76_RS14990 0.85 +1.9 3,141,634 - BWI76_RS14990 0.85 +0.3 3,141,634 - BWI76_RS14990 0.85 +0.3 3,141,636 + BWI76_RS14990 0.85 -2.4 3,141,639 - BWI76_RS14990 0.86 -1.7 3,141,644 - BWI76_RS14990 0.86 -2.2 3,141,644 - BWI76_RS14990 0.86 +0.4 3,141,644 - BWI76_RS14990 0.86 -0.3 3,141,644 - BWI76_RS14990 0.86 -0.0 3,141,644 - BWI76_RS14990 0.86 +0.8 3,141,644 - BWI76_RS14990 0.86 -0.4 3,141,646 - BWI76_RS14990 0.87 -0.1 3,141,654 - +0.2 3,141,739 - -3.5 3,141,740 + +1.5 3,141,758 + -2.8 3,141,766 - +1.0 3,141,853 - BWI76_RS14995 0.14 +0.5 3,141,853 - BWI76_RS14995 0.14 -1.1 3,141,863 - BWI76_RS14995 0.15 +0.8 3,141,868 - BWI76_RS14995 0.16 +0.2 3,141,870 - BWI76_RS14995 0.16 -1.2 3,141,935 - BWI76_RS14995 0.26 -0.4 3,141,935 - BWI76_RS14995 0.26 -0.7
Or see this region's nucleotide sequence