Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14060 and BWI76_RS14065 are separated by 338 nucleotides BWI76_RS14065 and BWI76_RS14070 are separated by 5 nucleotides BWI76_RS14070 and BWI76_RS14075 are separated by 17 nucleotides
BWI76_RS14060: BWI76_RS14060 - secretory lipase, at 2,938,480 to 2,939,622
_RS14060
BWI76_RS14065: BWI76_RS14065 - hypothetical protein, at 2,939,961 to 2,940,386
_RS14065
BWI76_RS14070: BWI76_RS14070 - ECF subfamily RNA polymerase sigma-24 subunit, at 2,940,392 to 2,940,952
_RS14070
BWI76_RS14075: BWI76_RS14075 - TetR family transcriptional regulator, at 2,940,970 to 2,941,605
_RS14075
Position (kb)
2939
2940
2941 Strain fitness (log2 ratio)
-2
-1
0
1 at 2939.004 kb on + strand, within BWI76_RS14060 at 2939.229 kb on + strand, within BWI76_RS14060 at 2939.381 kb on - strand, within BWI76_RS14060 at 2939.675 kb on - strand at 2939.823 kb on - strand at 2939.923 kb on - strand at 2939.923 kb on - strand at 2939.925 kb on + strand at 2939.933 kb on - strand at 2940.146 kb on - strand, within BWI76_RS14065 at 2940.253 kb on + strand, within BWI76_RS14065 at 2940.261 kb on - strand, within BWI76_RS14065 at 2940.760 kb on - strand, within BWI76_RS14070 at 2941.102 kb on + strand, within BWI76_RS14075 at 2941.246 kb on - strand, within BWI76_RS14075
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,939,004 + BWI76_RS14060 0.46 +0.8 2,939,229 + BWI76_RS14060 0.66 -0.3 2,939,381 - BWI76_RS14060 0.79 +0.5 2,939,675 - +1.2 2,939,823 - -0.3 2,939,923 - +0.8 2,939,923 - +0.5 2,939,925 + -0.5 2,939,933 - -1.1 2,940,146 - BWI76_RS14065 0.43 -2.2 2,940,253 + BWI76_RS14065 0.69 -1.6 2,940,261 - BWI76_RS14065 0.70 -0.2 2,940,760 - BWI76_RS14070 0.66 +1.5 2,941,102 + BWI76_RS14075 0.21 -1.7 2,941,246 - BWI76_RS14075 0.43 +0.7
Or see this region's nucleotide sequence