Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13845 and BWI76_RS13850 overlap by 1 nucleotides BWI76_RS13850 and BWI76_RS13855 are separated by 79 nucleotides BWI76_RS13855 and BWI76_RS13860 are separated by 115 nucleotides
BWI76_RS13845: BWI76_RS13845 - LysR family transcriptional regulator, at 2,888,335 to 2,889,237
_RS13845
BWI76_RS13850: BWI76_RS13850 - N-acetyltransferase, at 2,889,237 to 2,889,716
_RS13850
BWI76_RS13855: BWI76_RS13855 - peroxiredoxin, at 2,889,796 to 2,890,227
_RS13855
BWI76_RS13860: BWI76_RS13860 - hypothetical protein, at 2,890,343 to 2,891,212
_RS13860
Position (kb)
2889
2890 Strain fitness (log2 ratio)
-2
-1
0
1 at 2888.340 kb on - strand at 2888.441 kb on + strand, within BWI76_RS13845 at 2888.468 kb on + strand, within BWI76_RS13845 at 2888.608 kb on - strand, within BWI76_RS13845 at 2888.681 kb on + strand, within BWI76_RS13845 at 2888.820 kb on + strand, within BWI76_RS13845 at 2888.820 kb on + strand, within BWI76_RS13845 at 2889.458 kb on + strand, within BWI76_RS13850 at 2889.509 kb on - strand, within BWI76_RS13850 at 2889.546 kb on + strand, within BWI76_RS13850 at 2889.654 kb on - strand, within BWI76_RS13850 at 2889.718 kb on - strand at 2889.763 kb on - strand at 2889.919 kb on + strand, within BWI76_RS13855 at 2889.989 kb on + strand, within BWI76_RS13855 at 2890.008 kb on + strand, within BWI76_RS13855 at 2890.215 kb on + strand at 2890.256 kb on + strand at 2890.423 kb on + strand at 2890.608 kb on - strand, within BWI76_RS13860
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,888,340 - +0.7 2,888,441 + BWI76_RS13845 0.12 +0.2 2,888,468 + BWI76_RS13845 0.15 +0.2 2,888,608 - BWI76_RS13845 0.30 +1.7 2,888,681 + BWI76_RS13845 0.38 -0.1 2,888,820 + BWI76_RS13845 0.54 +0.1 2,888,820 + BWI76_RS13845 0.54 -1.0 2,889,458 + BWI76_RS13850 0.46 +0.6 2,889,509 - BWI76_RS13850 0.57 +1.1 2,889,546 + BWI76_RS13850 0.64 +1.3 2,889,654 - BWI76_RS13850 0.87 +1.0 2,889,718 - -0.9 2,889,763 - -0.6 2,889,919 + BWI76_RS13855 0.28 -0.4 2,889,989 + BWI76_RS13855 0.45 +0.4 2,890,008 + BWI76_RS13855 0.49 -0.9 2,890,215 + -0.1 2,890,256 + -0.0 2,890,423 + -2.1 2,890,608 - BWI76_RS13860 0.30 +0.1
Or see this region's nucleotide sequence