Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13850

Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13845 and BWI76_RS13850 overlap by 1 nucleotidesBWI76_RS13850 and BWI76_RS13855 are separated by 79 nucleotidesBWI76_RS13855 and BWI76_RS13860 are separated by 115 nucleotides BWI76_RS13845: BWI76_RS13845 - LysR family transcriptional regulator, at 2,888,335 to 2,889,237 _RS13845 BWI76_RS13850: BWI76_RS13850 - N-acetyltransferase, at 2,889,237 to 2,889,716 _RS13850 BWI76_RS13855: BWI76_RS13855 - peroxiredoxin, at 2,889,796 to 2,890,227 _RS13855 BWI76_RS13860: BWI76_RS13860 - hypothetical protein, at 2,890,343 to 2,891,212 _RS13860 Position (kb) 2889 2890Strain fitness (log2 ratio) -2 -1 0 1at 2888.340 kb on - strandat 2888.441 kb on + strand, within BWI76_RS13845at 2888.468 kb on + strand, within BWI76_RS13845at 2888.608 kb on - strand, within BWI76_RS13845at 2888.681 kb on + strand, within BWI76_RS13845at 2888.820 kb on + strand, within BWI76_RS13845at 2888.820 kb on + strand, within BWI76_RS13845at 2889.458 kb on + strand, within BWI76_RS13850at 2889.509 kb on - strand, within BWI76_RS13850at 2889.546 kb on + strand, within BWI76_RS13850at 2889.654 kb on - strand, within BWI76_RS13850at 2889.718 kb on - strandat 2889.763 kb on - strandat 2889.919 kb on + strand, within BWI76_RS13855at 2889.989 kb on + strand, within BWI76_RS13855at 2890.008 kb on + strand, within BWI76_RS13855at 2890.215 kb on + strandat 2890.256 kb on + strandat 2890.423 kb on + strandat 2890.608 kb on - strand, within BWI76_RS13860

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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2,888,340 - +0.7
2,888,441 + BWI76_RS13845 0.12 +0.2
2,888,468 + BWI76_RS13845 0.15 +0.2
2,888,608 - BWI76_RS13845 0.30 +1.7
2,888,681 + BWI76_RS13845 0.38 -0.1
2,888,820 + BWI76_RS13845 0.54 +0.1
2,888,820 + BWI76_RS13845 0.54 -1.0
2,889,458 + BWI76_RS13850 0.46 +0.6
2,889,509 - BWI76_RS13850 0.57 +1.1
2,889,546 + BWI76_RS13850 0.64 +1.3
2,889,654 - BWI76_RS13850 0.87 +1.0
2,889,718 - -0.9
2,889,763 - -0.6
2,889,919 + BWI76_RS13855 0.28 -0.4
2,889,989 + BWI76_RS13855 0.45 +0.4
2,890,008 + BWI76_RS13855 0.49 -0.9
2,890,215 + -0.1
2,890,256 + -0.0
2,890,423 + -2.1
2,890,608 - BWI76_RS13860 0.30 +0.1

Or see this region's nucleotide sequence