Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13620 and BWI76_RS13625 are separated by 145 nucleotides BWI76_RS13625 and BWI76_RS13630 are separated by 214 nucleotides BWI76_RS13630 and BWI76_RS13635 overlap by 4 nucleotides
BWI76_RS13620: BWI76_RS13620 - positive regulator for rhaBAD operon, at 2,839,042 to 2,839,863
_RS13620
BWI76_RS13625: BWI76_RS13625 - hypothetical protein, at 2,840,009 to 2,840,590
_RS13625
BWI76_RS13630: BWI76_RS13630 - ABC transporter, at 2,840,805 to 2,841,506
_RS13630
BWI76_RS13635: BWI76_RS13635 - extracellular solute-binding protein, at 2,841,503 to 2,842,471
_RS13635
Position (kb)
2840
2841
2842 Strain fitness (log2 ratio)
-2
-1
0
1 at 2839.827 kb on + strand at 2839.843 kb on - strand at 2839.858 kb on + strand at 2839.870 kb on + strand at 2839.934 kb on - strand at 2840.157 kb on + strand, within BWI76_RS13625 at 2840.371 kb on + strand, within BWI76_RS13625 at 2840.492 kb on - strand, within BWI76_RS13625 at 2840.546 kb on - strand at 2840.672 kb on + strand at 2840.701 kb on - strand at 2840.769 kb on + strand at 2840.905 kb on - strand, within BWI76_RS13630 at 2841.158 kb on + strand, within BWI76_RS13630 at 2841.166 kb on - strand, within BWI76_RS13630 at 2841.243 kb on - strand, within BWI76_RS13630 at 2841.320 kb on - strand at 2841.396 kb on + strand, within BWI76_RS13630 at 2841.466 kb on - strand at 2841.823 kb on + strand, within BWI76_RS13635 at 2842.030 kb on - strand, within BWI76_RS13635 at 2842.254 kb on - strand, within BWI76_RS13635
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,839,827 + -0.0 2,839,843 - +0.6 2,839,858 + -0.9 2,839,870 + -0.8 2,839,934 - -2.5 2,840,157 + BWI76_RS13625 0.25 +0.8 2,840,371 + BWI76_RS13625 0.62 +1.1 2,840,492 - BWI76_RS13625 0.83 -0.5 2,840,546 - -0.1 2,840,672 + -0.2 2,840,701 - -0.6 2,840,769 + +0.2 2,840,905 - BWI76_RS13630 0.14 +1.3 2,841,158 + BWI76_RS13630 0.50 +1.5 2,841,166 - BWI76_RS13630 0.51 -0.3 2,841,243 - BWI76_RS13630 0.62 +0.3 2,841,320 - +1.1 2,841,396 + BWI76_RS13630 0.84 +0.6 2,841,466 - +0.0 2,841,823 + BWI76_RS13635 0.33 +0.3 2,842,030 - BWI76_RS13635 0.54 +0.1 2,842,254 - BWI76_RS13635 0.78 -0.4
Or see this region's nucleotide sequence