Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13610 and BWI76_RS13615 are separated by 26 nucleotides BWI76_RS13615 and BWI76_RS13620 are separated by 203 nucleotides
BWI76_RS13610: BWI76_RS13610 - sugar transporter, at 2,835,858 to 2,837,240
_RS13610
BWI76_RS13615: BWI76_RS13615 - sugar hydrolase, at 2,837,267 to 2,838,838
_RS13615
BWI76_RS13620: BWI76_RS13620 - positive regulator for rhaBAD operon, at 2,839,042 to 2,839,863
_RS13620
Position (kb)
2837
2838
2839 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2836.351 kb on - strand, within BWI76_RS13610 at 2836.576 kb on - strand, within BWI76_RS13610 at 2836.731 kb on - strand, within BWI76_RS13610 at 2838.041 kb on + strand, within BWI76_RS13615 at 2838.049 kb on - strand, within BWI76_RS13615 at 2838.267 kb on - strand, within BWI76_RS13615 at 2838.267 kb on - strand, within BWI76_RS13615 at 2838.367 kb on + strand, within BWI76_RS13615 at 2838.375 kb on - strand, within BWI76_RS13615 at 2838.377 kb on + strand, within BWI76_RS13615 at 2838.477 kb on + strand, within BWI76_RS13615 at 2838.624 kb on + strand, within BWI76_RS13615 at 2838.728 kb on + strand at 2838.801 kb on + strand at 2838.840 kb on - strand at 2838.853 kb on + strand at 2838.859 kb on - strand at 2838.868 kb on + strand at 2838.868 kb on + strand at 2838.868 kb on + strand at 2838.868 kb on + strand at 2838.876 kb on - strand at 2838.876 kb on - strand at 2838.876 kb on - strand at 2838.979 kb on - strand at 2838.979 kb on - strand at 2838.979 kb on - strand at 2838.979 kb on - strand at 2839.006 kb on - strand at 2839.017 kb on + strand at 2839.017 kb on - strand at 2839.025 kb on - strand at 2839.044 kb on - strand at 2839.080 kb on + strand at 2839.080 kb on + strand at 2839.092 kb on + strand at 2839.093 kb on - strand at 2839.094 kb on - strand at 2839.101 kb on - strand at 2839.101 kb on - strand at 2839.101 kb on - strand at 2839.111 kb on + strand at 2839.115 kb on - strand at 2839.115 kb on - strand at 2839.157 kb on + strand, within BWI76_RS13620 at 2839.160 kb on - strand, within BWI76_RS13620 at 2839.160 kb on - strand, within BWI76_RS13620 at 2839.160 kb on - strand, within BWI76_RS13620 at 2839.183 kb on - strand, within BWI76_RS13620 at 2839.183 kb on - strand, within BWI76_RS13620 at 2839.190 kb on - strand, within BWI76_RS13620 at 2839.205 kb on + strand, within BWI76_RS13620 at 2839.261 kb on - strand, within BWI76_RS13620 at 2839.261 kb on - strand, within BWI76_RS13620 at 2839.319 kb on + strand, within BWI76_RS13620 at 2839.347 kb on + strand, within BWI76_RS13620 at 2839.350 kb on - strand, within BWI76_RS13620 at 2839.399 kb on + strand, within BWI76_RS13620 at 2839.399 kb on + strand, within BWI76_RS13620 at 2839.399 kb on + strand, within BWI76_RS13620 at 2839.406 kb on + strand, within BWI76_RS13620 at 2839.407 kb on - strand, within BWI76_RS13620 at 2839.409 kb on + strand, within BWI76_RS13620 at 2839.414 kb on - strand, within BWI76_RS13620 at 2839.442 kb on + strand, within BWI76_RS13620 at 2839.442 kb on + strand, within BWI76_RS13620 at 2839.478 kb on - strand, within BWI76_RS13620 at 2839.533 kb on + strand, within BWI76_RS13620 at 2839.544 kb on + strand, within BWI76_RS13620 at 2839.554 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.566 kb on + strand, within BWI76_RS13620 at 2839.568 kb on + strand, within BWI76_RS13620 at 2839.574 kb on - strand, within BWI76_RS13620 at 2839.574 kb on - strand, within BWI76_RS13620 at 2839.576 kb on + strand, within BWI76_RS13620 at 2839.579 kb on - strand, within BWI76_RS13620 at 2839.579 kb on - strand, within BWI76_RS13620 at 2839.579 kb on - strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.586 kb on + strand, within BWI76_RS13620 at 2839.594 kb on - strand, within BWI76_RS13620 at 2839.594 kb on - strand, within BWI76_RS13620 at 2839.594 kb on - strand, within BWI76_RS13620 at 2839.601 kb on + strand, within BWI76_RS13620 at 2839.609 kb on - strand, within BWI76_RS13620 at 2839.609 kb on - strand, within BWI76_RS13620 at 2839.681 kb on - strand, within BWI76_RS13620 at 2839.736 kb on + strand, within BWI76_RS13620 at 2839.751 kb on + strand, within BWI76_RS13620 at 2839.754 kb on - strand, within BWI76_RS13620 at 2839.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 2,836,351 - BWI76_RS13610 0.36 -0.2 2,836,576 - BWI76_RS13610 0.52 +0.1 2,836,731 - BWI76_RS13610 0.63 -0.3 2,838,041 + BWI76_RS13615 0.49 +1.1 2,838,049 - BWI76_RS13615 0.50 +0.1 2,838,267 - BWI76_RS13615 0.64 +1.1 2,838,267 - BWI76_RS13615 0.64 +0.2 2,838,367 + BWI76_RS13615 0.70 +0.9 2,838,375 - BWI76_RS13615 0.70 +1.4 2,838,377 + BWI76_RS13615 0.71 +0.4 2,838,477 + BWI76_RS13615 0.77 -0.6 2,838,624 + BWI76_RS13615 0.86 -0.8 2,838,728 + +0.1 2,838,801 + +0.1 2,838,840 - +0.7 2,838,853 + -0.9 2,838,859 - -1.2 2,838,868 + -0.4 2,838,868 + +0.5 2,838,868 + +0.9 2,838,868 + -1.6 2,838,876 - -1.2 2,838,876 - -2.5 2,838,876 - -1.2 2,838,979 - -1.3 2,838,979 - +0.7 2,838,979 - +1.7 2,838,979 - +0.8 2,839,006 - +0.5 2,839,017 + +0.4 2,839,017 - +0.3 2,839,025 - +1.1 2,839,044 - +1.7 2,839,080 + -2.3 2,839,080 + -1.7 2,839,092 + -0.5 2,839,093 - -1.9 2,839,094 - -1.3 2,839,101 - -1.8 2,839,101 - -0.5 2,839,101 - +2.6 2,839,111 + +1.1 2,839,115 - +0.3 2,839,115 - -2.4 2,839,157 + BWI76_RS13620 0.14 -0.7 2,839,160 - BWI76_RS13620 0.14 +0.4 2,839,160 - BWI76_RS13620 0.14 +0.3 2,839,160 - BWI76_RS13620 0.14 -0.5 2,839,183 - BWI76_RS13620 0.17 +1.1 2,839,183 - BWI76_RS13620 0.17 -0.5 2,839,190 - BWI76_RS13620 0.18 +1.5 2,839,205 + BWI76_RS13620 0.20 -0.9 2,839,261 - BWI76_RS13620 0.27 -0.1 2,839,261 - BWI76_RS13620 0.27 -1.9 2,839,319 + BWI76_RS13620 0.34 -2.1 2,839,347 + BWI76_RS13620 0.37 -0.5 2,839,350 - BWI76_RS13620 0.37 +0.1 2,839,399 + BWI76_RS13620 0.43 -0.9 2,839,399 + BWI76_RS13620 0.43 +0.9 2,839,399 + BWI76_RS13620 0.43 +1.5 2,839,406 + BWI76_RS13620 0.44 -1.5 2,839,407 - BWI76_RS13620 0.44 +0.1 2,839,409 + BWI76_RS13620 0.45 +0.6 2,839,414 - BWI76_RS13620 0.45 +0.4 2,839,442 + BWI76_RS13620 0.49 -1.1 2,839,442 + BWI76_RS13620 0.49 +0.3 2,839,478 - BWI76_RS13620 0.53 -0.4 2,839,533 + BWI76_RS13620 0.60 +1.1 2,839,544 + BWI76_RS13620 0.61 -2.3 2,839,554 + BWI76_RS13620 0.62 +0.1 2,839,566 + BWI76_RS13620 0.64 -1.8 2,839,566 + BWI76_RS13620 0.64 +0.7 2,839,566 + BWI76_RS13620 0.64 +2.1 2,839,566 + BWI76_RS13620 0.64 -0.4 2,839,568 + BWI76_RS13620 0.64 +1.1 2,839,574 - BWI76_RS13620 0.65 +0.5 2,839,574 - BWI76_RS13620 0.65 -3.2 2,839,576 + BWI76_RS13620 0.65 -1.5 2,839,579 - BWI76_RS13620 0.65 -0.9 2,839,579 - BWI76_RS13620 0.65 -0.5 2,839,579 - BWI76_RS13620 0.65 -1.8 2,839,586 + BWI76_RS13620 0.66 -1.3 2,839,586 + BWI76_RS13620 0.66 +0.6 2,839,586 + BWI76_RS13620 0.66 +0.6 2,839,586 + BWI76_RS13620 0.66 -1.6 2,839,586 + BWI76_RS13620 0.66 -1.0 2,839,594 - BWI76_RS13620 0.67 +0.9 2,839,594 - BWI76_RS13620 0.67 -0.3 2,839,594 - BWI76_RS13620 0.67 +0.2 2,839,601 + BWI76_RS13620 0.68 +0.4 2,839,609 - BWI76_RS13620 0.69 -0.4 2,839,609 - BWI76_RS13620 0.69 -1.8 2,839,681 - BWI76_RS13620 0.78 +0.7 2,839,736 + BWI76_RS13620 0.84 +0.5 2,839,751 + BWI76_RS13620 0.86 +2.6 2,839,754 - BWI76_RS13620 0.87 -0.5 2,839,827 + -0.0
Or see this region's nucleotide sequence