Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13490

Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13485 and BWI76_RS13490 are separated by 44 nucleotidesBWI76_RS13490 and BWI76_RS13495 are separated by 291 nucleotidesBWI76_RS13495 and BWI76_RS13500 are separated by 72 nucleotides BWI76_RS13485: BWI76_RS13485 - NADP-dependent oxidoreductase, at 2,810,923 to 2,811,960 _RS13485 BWI76_RS13490: BWI76_RS13490 - pyrimidine-specific ribonucleoside hydrolase RihA, at 2,812,005 to 2,812,940 _RS13490 BWI76_RS13495: BWI76_RS13495 - hypothetical protein, at 2,813,232 to 2,813,531 _RS13495 BWI76_RS13500: BWI76_RS13500 - TonB-dependent receptor, at 2,813,604 to 2,815,715 _RS13500 Position (kb) 2812 2813Strain fitness (log2 ratio) -3 -2 -1 0 1at 2811.278 kb on + strand, within BWI76_RS13485at 2811.343 kb on - strand, within BWI76_RS13485at 2811.413 kb on - strand, within BWI76_RS13485at 2811.521 kb on - strand, within BWI76_RS13485at 2812.117 kb on + strand, within BWI76_RS13490at 2812.202 kb on + strand, within BWI76_RS13490at 2812.303 kb on + strand, within BWI76_RS13490at 2812.370 kb on + strand, within BWI76_RS13490at 2812.646 kb on - strandat 2812.768 kb on + strand, within BWI76_RS13490at 2812.864 kb on + strandat 2813.007 kb on + strandat 2813.007 kb on + strandat 2813.007 kb on + strandat 2813.020 kb on - strandat 2813.025 kb on - strandat 2813.247 kb on + strandat 2813.259 kb on + strandat 2813.259 kb on + strandat 2813.267 kb on - strand, within BWI76_RS13495at 2813.267 kb on - strand, within BWI76_RS13495at 2813.455 kb on + strand, within BWI76_RS13495at 2813.548 kb on + strandat 2813.800 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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2,811,278 + BWI76_RS13485 0.34 -1.1
2,811,343 - BWI76_RS13485 0.40 -0.3
2,811,413 - BWI76_RS13485 0.47 -0.4
2,811,521 - BWI76_RS13485 0.58 +0.6
2,812,117 + BWI76_RS13490 0.12 -1.9
2,812,202 + BWI76_RS13490 0.21 -1.3
2,812,303 + BWI76_RS13490 0.32 -1.2
2,812,370 + BWI76_RS13490 0.39 +1.1
2,812,646 - +1.1
2,812,768 + BWI76_RS13490 0.82 -2.1
2,812,864 + +0.2
2,813,007 + -2.3
2,813,007 + -0.1
2,813,007 + -0.4
2,813,020 - -0.8
2,813,025 - +0.4
2,813,247 + +1.1
2,813,259 + +1.6
2,813,259 + +0.8
2,813,267 - BWI76_RS13495 0.12 +0.9
2,813,267 - BWI76_RS13495 0.12 +0.1
2,813,455 + BWI76_RS13495 0.74 +0.2
2,813,548 + +0.2
2,813,800 + -3.3

Or see this region's nucleotide sequence