Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11640

Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11630 and BWI76_RS11635 are separated by 78 nucleotidesBWI76_RS11635 and BWI76_RS11640 overlap by 1 nucleotidesBWI76_RS11640 and BWI76_RS11645 overlap by 28 nucleotides BWI76_RS11630: BWI76_RS11630 - sulfurtransferase, at 2,446,833 to 2,448,140 _RS11630 BWI76_RS11635: BWI76_RS11635 - ABC transporter, at 2,448,219 to 2,448,851 _RS11635 BWI76_RS11640: BWI76_RS11640 - ABC transporter membrane protein, at 2,448,851 to 2,450,386 _RS11640 BWI76_RS11645: BWI76_RS11645 - ABC transporter substrate-binding protein, at 2,450,359 to 2,451,519 _RS11645 Position (kb) 2448 2449 2450 2451Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2447.864 kb on - strand, within BWI76_RS11630at 2447.902 kb on - strand, within BWI76_RS11630at 2448.372 kb on - strand, within BWI76_RS11635at 2448.574 kb on + strand, within BWI76_RS11635at 2448.798 kb on + strandat 2448.862 kb on - strandat 2448.929 kb on - strandat 2448.964 kb on - strandat 2449.006 kb on - strand, within BWI76_RS11640at 2449.235 kb on - strand, within BWI76_RS11640at 2449.978 kb on + strand, within BWI76_RS11640at 2449.986 kb on - strand, within BWI76_RS11640at 2450.218 kb on - strand, within BWI76_RS11640at 2450.364 kb on - strandat 2450.459 kb on - strandat 2450.526 kb on - strand, within BWI76_RS11645at 2450.721 kb on + strand, within BWI76_RS11645at 2450.729 kb on + strand, within BWI76_RS11645

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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2,447,864 - BWI76_RS11630 0.79 +0.2
2,447,902 - BWI76_RS11630 0.82 +0.4
2,448,372 - BWI76_RS11635 0.24 +0.9
2,448,574 + BWI76_RS11635 0.56 -1.4
2,448,798 + -2.9
2,448,862 - -0.6
2,448,929 - +1.1
2,448,964 - +0.2
2,449,006 - BWI76_RS11640 0.10 +0.7
2,449,235 - BWI76_RS11640 0.25 +2.0
2,449,978 + BWI76_RS11640 0.73 +0.2
2,449,986 - BWI76_RS11640 0.74 +0.2
2,450,218 - BWI76_RS11640 0.89 +0.8
2,450,364 - -0.7
2,450,459 - +0.5
2,450,526 - BWI76_RS11645 0.14 +0.9
2,450,721 + BWI76_RS11645 0.31 +0.4
2,450,729 + BWI76_RS11645 0.32 -0.1

Or see this region's nucleotide sequence