Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09160 and BWI76_RS09165 are separated by 47 nucleotides BWI76_RS09165 and BWI76_RS09170 overlap by 1 nucleotides BWI76_RS09170 and BWI76_RS09175 are separated by 149 nucleotides BWI76_RS09175 and BWI76_RS09180 are separated by 157 nucleotides
BWI76_RS09160: BWI76_RS09160 - multidrug transporter MdfA, at 1,934,987 to 1,936,222
_RS09160
BWI76_RS09165: BWI76_RS09165 - phosphatase YbjI, at 1,936,270 to 1,937,085
_RS09165
BWI76_RS09170: BWI76_RS09170 - MFS transporter, at 1,937,085 to 1,938,287
_RS09170
BWI76_RS09175: BWI76_RS09175 - DNA-binding transcriptional regulator, at 1,938,437 to 1,938,979
_RS09175
BWI76_RS09180: BWI76_RS09180 - hypothetical protein, at 1,939,137 to 1,939,406
_RS09180
Position (kb)
1937
1938
1939 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1936.299 kb on - strand at 1936.360 kb on + strand, within BWI76_RS09165 at 1936.463 kb on - strand, within BWI76_RS09165 at 1936.472 kb on + strand, within BWI76_RS09165 at 1936.479 kb on - strand, within BWI76_RS09165 at 1936.535 kb on + strand at 1936.543 kb on - strand, within BWI76_RS09165 at 1936.922 kb on - strand, within BWI76_RS09165 at 1937.081 kb on - strand at 1937.470 kb on - strand, within BWI76_RS09170 at 1937.500 kb on - strand, within BWI76_RS09170 at 1937.540 kb on + strand, within BWI76_RS09170 at 1937.792 kb on + strand, within BWI76_RS09170 at 1937.837 kb on + strand, within BWI76_RS09170 at 1937.905 kb on + strand, within BWI76_RS09170 at 1938.009 kb on - strand, within BWI76_RS09170 at 1938.096 kb on - strand, within BWI76_RS09170 at 1938.096 kb on - strand, within BWI76_RS09170 at 1938.096 kb on - strand, within BWI76_RS09170 at 1938.096 kb on - strand, within BWI76_RS09170 at 1938.411 kb on - strand at 1938.524 kb on + strand, within BWI76_RS09175 at 1938.524 kb on - strand, within BWI76_RS09175 at 1938.599 kb on - strand, within BWI76_RS09175 at 1938.615 kb on + strand, within BWI76_RS09175 at 1938.727 kb on + strand, within BWI76_RS09175 at 1938.735 kb on - strand, within BWI76_RS09175 at 1938.735 kb on - strand, within BWI76_RS09175 at 1938.752 kb on - strand, within BWI76_RS09175 at 1938.837 kb on + strand, within BWI76_RS09175 at 1938.845 kb on - strand, within BWI76_RS09175 at 1938.845 kb on - strand, within BWI76_RS09175 at 1938.953 kb on + strand at 1939.094 kb on - strand at 1939.211 kb on - strand, within BWI76_RS09180
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,936,299 - +0.1 1,936,360 + BWI76_RS09165 0.11 -0.4 1,936,463 - BWI76_RS09165 0.24 +1.1 1,936,472 + BWI76_RS09165 0.25 -0.6 1,936,479 - BWI76_RS09165 0.26 +1.2 1,936,535 + +3.5 1,936,543 - BWI76_RS09165 0.33 +0.6 1,936,922 - BWI76_RS09165 0.80 +0.2 1,937,081 - +0.1 1,937,470 - BWI76_RS09170 0.32 +2.6 1,937,500 - BWI76_RS09170 0.34 +1.1 1,937,540 + BWI76_RS09170 0.38 -0.1 1,937,792 + BWI76_RS09170 0.59 -0.1 1,937,837 + BWI76_RS09170 0.63 +0.8 1,937,905 + BWI76_RS09170 0.68 +1.0 1,938,009 - BWI76_RS09170 0.77 +0.0 1,938,096 - BWI76_RS09170 0.84 -0.1 1,938,096 - BWI76_RS09170 0.84 +1.2 1,938,096 - BWI76_RS09170 0.84 -0.4 1,938,096 - BWI76_RS09170 0.84 +0.9 1,938,411 - -0.2 1,938,524 + BWI76_RS09175 0.16 +0.3 1,938,524 - BWI76_RS09175 0.16 +0.1 1,938,599 - BWI76_RS09175 0.30 -2.1 1,938,615 + BWI76_RS09175 0.33 +0.1 1,938,727 + BWI76_RS09175 0.53 -1.3 1,938,735 - BWI76_RS09175 0.55 +1.9 1,938,735 - BWI76_RS09175 0.55 -2.0 1,938,752 - BWI76_RS09175 0.58 +0.1 1,938,837 + BWI76_RS09175 0.74 -0.5 1,938,845 - BWI76_RS09175 0.75 -0.7 1,938,845 - BWI76_RS09175 0.75 +2.0 1,938,953 + -1.4 1,939,094 - -0.3 1,939,211 - BWI76_RS09180 0.27 -0.7
Or see this region's nucleotide sequence