Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09125 and BWI76_RS09130 are separated by 376 nucleotides BWI76_RS09130 and BWI76_RS09135 are separated by 104 nucleotides
BWI76_RS09125: BWI76_RS09125 - MFS transporter, at 1,927,852 to 1,929,096
_RS09125
BWI76_RS09130: BWI76_RS09130 - biofilm formation regulatory protein BssR, at 1,929,473 to 1,929,856
_RS09130
BWI76_RS09135: BWI76_RS09135 - oxidoreductase, at 1,929,961 to 1,931,073
_RS09135
Position (kb)
1929
1930 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1928.477 kb on - strand, within BWI76_RS09125 at 1928.477 kb on - strand, within BWI76_RS09125 at 1928.477 kb on - strand, within BWI76_RS09125 at 1928.541 kb on + strand, within BWI76_RS09125 at 1928.541 kb on + strand, within BWI76_RS09125 at 1928.549 kb on - strand, within BWI76_RS09125 at 1928.549 kb on - strand, within BWI76_RS09125 at 1928.549 kb on - strand, within BWI76_RS09125 at 1928.591 kb on - strand, within BWI76_RS09125 at 1928.765 kb on - strand, within BWI76_RS09125 at 1928.799 kb on - strand, within BWI76_RS09125 at 1928.845 kb on - strand, within BWI76_RS09125 at 1928.948 kb on + strand, within BWI76_RS09125 at 1928.953 kb on + strand, within BWI76_RS09125 at 1929.039 kb on - strand at 1929.105 kb on + strand at 1929.126 kb on - strand at 1929.476 kb on + strand at 1929.495 kb on - strand at 1929.619 kb on + strand, within BWI76_RS09130 at 1929.740 kb on + strand, within BWI76_RS09130 at 1929.748 kb on - strand, within BWI76_RS09130 at 1929.929 kb on - strand at 1930.520 kb on - strand, within BWI76_RS09135 at 1930.603 kb on + strand, within BWI76_RS09135 at 1930.603 kb on + strand, within BWI76_RS09135 at 1930.611 kb on - strand, within BWI76_RS09135 at 1930.730 kb on + strand, within BWI76_RS09135
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,928,477 - BWI76_RS09125 0.50 +1.1 1,928,477 - BWI76_RS09125 0.50 -0.4 1,928,477 - BWI76_RS09125 0.50 -0.4 1,928,541 + BWI76_RS09125 0.55 -0.6 1,928,541 + BWI76_RS09125 0.55 -0.6 1,928,549 - BWI76_RS09125 0.56 +1.1 1,928,549 - BWI76_RS09125 0.56 -0.1 1,928,549 - BWI76_RS09125 0.56 -0.6 1,928,591 - BWI76_RS09125 0.59 -1.3 1,928,765 - BWI76_RS09125 0.73 +0.3 1,928,799 - BWI76_RS09125 0.76 +0.6 1,928,845 - BWI76_RS09125 0.80 +1.3 1,928,948 + BWI76_RS09125 0.88 -2.8 1,928,953 + BWI76_RS09125 0.88 -0.0 1,929,039 - +0.4 1,929,105 + -1.1 1,929,126 - -2.6 1,929,476 + +0.5 1,929,495 - -2.0 1,929,619 + BWI76_RS09130 0.38 +1.7 1,929,740 + BWI76_RS09130 0.70 +1.1 1,929,748 - BWI76_RS09130 0.72 -0.8 1,929,929 - +0.4 1,930,520 - BWI76_RS09135 0.50 -0.8 1,930,603 + BWI76_RS09135 0.58 +0.9 1,930,603 + BWI76_RS09135 0.58 +1.8 1,930,611 - BWI76_RS09135 0.58 +0.5 1,930,730 + BWI76_RS09135 0.69 +0.5
Or see this region's nucleotide sequence