Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08500 and BWI76_RS08505 are separated by 15 nucleotides BWI76_RS08505 and BWI76_RS08510 overlap by 1 nucleotides BWI76_RS08510 and BWI76_RS08515 are separated by 149 nucleotides BWI76_RS08515 and BWI76_RS08520 are separated by 5 nucleotides BWI76_RS08520 and BWI76_RS08525 are separated by 3 nucleotides BWI76_RS08525 and BWI76_RS08530 are separated by 105 nucleotides
BWI76_RS08500: BWI76_RS08500 - cytochrome d ubiquinol oxidase subunit 2, at 1,801,679 to 1,802,818
_RS08500
BWI76_RS08505: BWI76_RS08505 - cytochrome bd-I oxidase subunit CydX, at 1,802,834 to 1,802,947
_RS08505
BWI76_RS08510: BWI76_RS08510 - cyd operon protein YbgE, at 1,802,947 to 1,803,237
_RS08510
BWI76_RS08515: BWI76_RS08515 - acyl-CoA thioesterase YbgC, at 1,803,387 to 1,803,791
_RS08515
BWI76_RS08520: BWI76_RS08520 - colicin transporter TolQ, at 1,803,797 to 1,804,480
_RS08520
BWI76_RS08525: BWI76_RS08525 - colicin transporter, at 1,804,484 to 1,804,912
_RS08525
BWI76_RS08530: BWI76_RS08530 - protein TolA, at 1,805,018 to 1,806,355
_RS08530
Position (kb) 1803
1804
1805 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1802.812 kb on + strand at 1802.965 kb on + strand at 1803.068 kb on + strand, within BWI76_RS08510 at 1803.086 kb on - strand, within BWI76_RS08510 at 1803.105 kb on + strand, within BWI76_RS08510 at 1803.125 kb on + strand, within BWI76_RS08510 at 1803.447 kb on + strand, within BWI76_RS08515 at 1803.764 kb on + strand at 1803.812 kb on - strand at 1803.823 kb on + strand at 1804.000 kb on - strand, within BWI76_RS08520 at 1804.358 kb on + strand, within BWI76_RS08520 at 1804.368 kb on + strand, within BWI76_RS08520 at 1804.421 kb on - strand at 1804.433 kb on + strand at 1804.486 kb on + strand at 1804.491 kb on + strand at 1804.546 kb on + strand, within BWI76_RS08525 at 1804.697 kb on + strand, within BWI76_RS08525 at 1804.753 kb on + strand, within BWI76_RS08525 at 1805.247 kb on + strand, within BWI76_RS08530
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,802,812 + +1.1 1,802,965 + +0.4 1,803,068 + BWI76_RS08510 0.42 -0.9 1,803,086 - BWI76_RS08510 0.48 +0.8 1,803,105 + BWI76_RS08510 0.54 -0.3 1,803,125 + BWI76_RS08510 0.61 +0.6 1,803,447 + BWI76_RS08515 0.15 +0.5 1,803,764 + +0.2 1,803,812 - -2.2 1,803,823 + -2.6 1,804,000 - BWI76_RS08520 0.30 -2.9 1,804,358 + BWI76_RS08520 0.82 +0.1 1,804,368 + BWI76_RS08520 0.83 -0.5 1,804,421 - +0.1 1,804,433 + -1.4 1,804,486 + -2.1 1,804,491 + -2.5 1,804,546 + BWI76_RS08525 0.14 -2.1 1,804,697 + BWI76_RS08525 0.50 +1.1 1,804,753 + BWI76_RS08525 0.63 -0.5 1,805,247 + BWI76_RS08530 0.17 -2.4
Or see this region's nucleotide sequence