Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07735 and BWI76_RS07740 are separated by 68 nucleotides BWI76_RS07740 and BWI76_RS07745 are separated by 370 nucleotides
BWI76_RS07735: BWI76_RS07735 - MFS transporter, at 1,640,676 to 1,641,917
_RS07735
BWI76_RS07740: BWI76_RS07740 - Fe2+-enterobactin ABC transporter substrate-binding protein, at 1,641,986 to 1,642,945
_RS07740
BWI76_RS07745: BWI76_RS07745 - isochorismate synthase EntC, at 1,643,316 to 1,644,491
_RS07745
Position (kb)
1641
1642
1643 Strain fitness (log2 ratio)
-1
0
1 at 1641.025 kb on + strand, within BWI76_RS07735 at 1641.368 kb on + strand, within BWI76_RS07735 at 1641.376 kb on - strand, within BWI76_RS07735 at 1641.389 kb on + strand, within BWI76_RS07735 at 1641.498 kb on + strand, within BWI76_RS07735 at 1641.587 kb on + strand, within BWI76_RS07735 at 1641.587 kb on + strand, within BWI76_RS07735 at 1641.595 kb on - strand, within BWI76_RS07735 at 1641.860 kb on - strand at 1642.278 kb on - strand, within BWI76_RS07740 at 1642.726 kb on - strand, within BWI76_RS07740 at 1643.195 kb on + strand at 1643.579 kb on + strand, within BWI76_RS07745 at 1643.587 kb on - strand, within BWI76_RS07745 at 1643.596 kb on + strand, within BWI76_RS07745 at 1643.670 kb on - strand, within BWI76_RS07745 at 1643.848 kb on + strand, within BWI76_RS07745 at 1643.848 kb on + strand, within BWI76_RS07745
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,641,025 + BWI76_RS07735 0.28 +1.3 1,641,368 + BWI76_RS07735 0.56 -0.1 1,641,376 - BWI76_RS07735 0.56 +1.1 1,641,389 + BWI76_RS07735 0.57 -0.3 1,641,498 + BWI76_RS07735 0.66 +0.6 1,641,587 + BWI76_RS07735 0.73 +0.6 1,641,587 + BWI76_RS07735 0.73 +1.2 1,641,595 - BWI76_RS07735 0.74 +1.1 1,641,860 - +0.5 1,642,278 - BWI76_RS07740 0.30 +0.7 1,642,726 - BWI76_RS07740 0.77 +1.4 1,643,195 + +0.8 1,643,579 + BWI76_RS07745 0.22 -0.5 1,643,587 - BWI76_RS07745 0.23 -0.7 1,643,596 + BWI76_RS07745 0.24 +0.8 1,643,670 - BWI76_RS07745 0.30 -1.0 1,643,848 + BWI76_RS07745 0.45 +1.4 1,643,848 + BWI76_RS07745 0.45 +0.4
Or see this region's nucleotide sequence