Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07590 and BWI76_RS07595 are separated by 581 nucleotides BWI76_RS07595 and BWI76_RS07600 are separated by 182 nucleotides
BWI76_RS07590: BWI76_RS07590 - glutamate ABC transporter ATP-binding protein, at 1,606,900 to 1,607,661
_RS07590
BWI76_RS07595: BWI76_RS07595 - putative oxidoreductase, at 1,608,243 to 1,609,007
_RS07595
BWI76_RS07600: BWI76_RS07600 - aspartate aminotransferase family protein, at 1,609,190 to 1,610,527
_RS07600
Position (kb)
1608
1609
1610 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1607.365 kb on - strand, within BWI76_RS07590 at 1607.437 kb on - strand, within BWI76_RS07590 at 1607.671 kb on - strand at 1607.697 kb on + strand at 1607.788 kb on - strand at 1607.788 kb on - strand at 1607.813 kb on - strand at 1607.923 kb on - strand at 1607.930 kb on + strand at 1607.938 kb on - strand at 1608.157 kb on - strand at 1608.157 kb on - strand at 1608.249 kb on - strand at 1608.347 kb on - strand, within BWI76_RS07595 at 1608.352 kb on + strand, within BWI76_RS07595 at 1608.570 kb on - strand, within BWI76_RS07595 at 1608.873 kb on - strand, within BWI76_RS07595 at 1609.040 kb on + strand at 1609.215 kb on - strand at 1609.287 kb on + strand at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.588 kb on + strand, within BWI76_RS07600 at 1609.596 kb on - strand, within BWI76_RS07600 at 1609.779 kb on - strand, within BWI76_RS07600
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 1,607,365 - BWI76_RS07590 0.61 -0.7 1,607,437 - BWI76_RS07590 0.70 +0.5 1,607,671 - +0.4 1,607,697 + -3.0 1,607,788 - +0.9 1,607,788 - +0.8 1,607,813 - -0.7 1,607,923 - -3.0 1,607,930 + +0.3 1,607,938 - +0.3 1,608,157 - -2.1 1,608,157 - +0.4 1,608,249 - -0.2 1,608,347 - BWI76_RS07595 0.14 +0.1 1,608,352 + BWI76_RS07595 0.14 +1.4 1,608,570 - BWI76_RS07595 0.43 +0.9 1,608,873 - BWI76_RS07595 0.82 +0.1 1,609,040 + -0.9 1,609,215 - +0.5 1,609,287 + +0.4 1,609,588 + BWI76_RS07600 0.30 +1.9 1,609,588 + BWI76_RS07600 0.30 +1.2 1,609,588 + BWI76_RS07600 0.30 -1.0 1,609,596 - BWI76_RS07600 0.30 -0.2 1,609,779 - BWI76_RS07600 0.44 +0.2
Or see this region's nucleotide sequence