Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06880

Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06875 and BWI76_RS06880 are separated by 322 nucleotidesBWI76_RS06880 and BWI76_RS06885 are separated by 1 nucleotidesBWI76_RS06885 and BWI76_RS06890 are separated by 34 nucleotides BWI76_RS06875: BWI76_RS06875 - conjugal transfer protein TraB, at 1,444,037 to 1,444,831 _RS06875 BWI76_RS06880: BWI76_RS06880 - biopolymer transport protein ExbD/TolR, at 1,445,154 to 1,445,561 _RS06880 BWI76_RS06885: BWI76_RS06885 - TonB family protein, at 1,445,563 to 1,446,306 _RS06885 BWI76_RS06890: BWI76_RS06890 - TonB-dependent receptor, at 1,446,341 to 1,448,581 _RS06890 Position (kb) 1445 1446Strain fitness (log2 ratio) -3 -2 -1 0 1at 1444.180 kb on + strand, within BWI76_RS06875at 1444.180 kb on + strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.188 kb on - strand, within BWI76_RS06875at 1444.279 kb on + strand, within BWI76_RS06875at 1444.373 kb on + strand, within BWI76_RS06875at 1444.381 kb on - strand, within BWI76_RS06875at 1444.392 kb on + strand, within BWI76_RS06875at 1444.567 kb on - strand, within BWI76_RS06875at 1444.716 kb on - strand, within BWI76_RS06875at 1444.726 kb on + strand, within BWI76_RS06875at 1444.726 kb on + strand, within BWI76_RS06875at 1444.734 kb on - strand, within BWI76_RS06875at 1444.740 kb on + strand, within BWI76_RS06875at 1444.758 kb on - strandat 1444.836 kb on + strandat 1445.279 kb on - strand, within BWI76_RS06880at 1445.413 kb on + strand, within BWI76_RS06880at 1445.454 kb on + strand, within BWI76_RS06880at 1446.112 kb on - strand, within BWI76_RS06885at 1446.191 kb on - strand, within BWI76_RS06885at 1446.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
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1,444,180 + BWI76_RS06875 0.18 +0.5
1,444,180 + BWI76_RS06875 0.18 +1.7
1,444,188 - BWI76_RS06875 0.19 +0.4
1,444,188 - BWI76_RS06875 0.19 +0.3
1,444,188 - BWI76_RS06875 0.19 -0.6
1,444,188 - BWI76_RS06875 0.19 -0.8
1,444,188 - BWI76_RS06875 0.19 +0.8
1,444,279 + BWI76_RS06875 0.30 +0.8
1,444,373 + BWI76_RS06875 0.42 -1.4
1,444,381 - BWI76_RS06875 0.43 -3.1
1,444,392 + BWI76_RS06875 0.45 +0.5
1,444,567 - BWI76_RS06875 0.67 +0.3
1,444,716 - BWI76_RS06875 0.85 +0.7
1,444,726 + BWI76_RS06875 0.87 +1.0
1,444,726 + BWI76_RS06875 0.87 +0.4
1,444,734 - BWI76_RS06875 0.88 -1.8
1,444,740 + BWI76_RS06875 0.88 -0.4
1,444,758 - -1.0
1,444,836 + -1.2
1,445,279 - BWI76_RS06880 0.31 +1.6
1,445,413 + BWI76_RS06880 0.63 +0.2
1,445,454 + BWI76_RS06880 0.74 -1.5
1,446,112 - BWI76_RS06885 0.74 +1.2
1,446,191 - BWI76_RS06885 0.84 -0.2
1,446,519 - +0.3

Or see this region's nucleotide sequence