Experiment: RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00985 and BWI76_RS00990 are separated by 163 nucleotides BWI76_RS00990 and BWI76_RS00995 are separated by 100 nucleotides BWI76_RS00995 and BWI76_RS01000 are separated by 52 nucleotides BWI76_RS01000 and BWI76_RS01005 are separated by 194 nucleotides
BWI76_RS00985: BWI76_RS00985 - transcriptional regulator IlvY, at 201,750 to 202,640
_RS00985
BWI76_RS00990: BWI76_RS00990 - ketol-acid reductoisomerase, at 202,804 to 204,279
_RS00990
BWI76_RS00995: BWI76_RS00995 - peptidyl-prolyl cis-trans isomerase, at 204,380 to 204,661
_RS00995
BWI76_RS01000: BWI76_RS01000 - peptidyl-prolyl cis-trans isomerase, at 204,714 to 204,995
_RS01000
BWI76_RS01005: BWI76_RS01005 - CarD family transcriptional regulator, at 205,190 to 205,894
_RS01005
Position (kb) 202
203
204
205 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 201.918 kb on - strand, within BWI76_RS00985 at 201.928 kb on - strand, within BWI76_RS00985 at 201.974 kb on + strand, within BWI76_RS00985 at 202.030 kb on - strand, within BWI76_RS00985 at 202.043 kb on - strand, within BWI76_RS00985 at 202.101 kb on - strand, within BWI76_RS00985 at 202.114 kb on + strand, within BWI76_RS00985 at 202.114 kb on + strand, within BWI76_RS00985 at 202.177 kb on + strand, within BWI76_RS00985 at 202.264 kb on + strand, within BWI76_RS00985 at 202.444 kb on + strand, within BWI76_RS00985 at 202.515 kb on + strand, within BWI76_RS00985 at 202.560 kb on + strand at 202.610 kb on + strand at 202.625 kb on - strand at 202.796 kb on + strand at 202.862 kb on - strand at 202.960 kb on + strand, within BWI76_RS00990 at 202.968 kb on - strand, within BWI76_RS00990 at 202.971 kb on + strand, within BWI76_RS00990 at 202.976 kb on + strand, within BWI76_RS00990 at 203.048 kb on - strand, within BWI76_RS00990 at 203.182 kb on + strand, within BWI76_RS00990 at 203.379 kb on + strand, within BWI76_RS00990 at 203.617 kb on - strand, within BWI76_RS00990 at 203.617 kb on - strand, within BWI76_RS00990 at 203.709 kb on + strand, within BWI76_RS00990 at 204.075 kb on - strand at 204.167 kb on + strand at 204.305 kb on + strand at 204.306 kb on + strand at 204.330 kb on + strand at 204.458 kb on + strand, within BWI76_RS00995 at 204.466 kb on - strand, within BWI76_RS00995 at 204.496 kb on - strand, within BWI76_RS00995 at 204.720 kb on - strand at 204.783 kb on - strand, within BWI76_RS01000 at 204.800 kb on - strand at 204.819 kb on + strand, within BWI76_RS01000 at 204.906 kb on + strand, within BWI76_RS01000 at 204.936 kb on - strand, within BWI76_RS01000 at 204.948 kb on + strand, within BWI76_RS01000 at 204.977 kb on - strand at 204.977 kb on - strand at 205.053 kb on + strand at 205.053 kb on + strand at 205.145 kb on + strand at 205.163 kb on + strand at 205.163 kb on + strand at 205.165 kb on + strand at 205.165 kb on + strand at 205.166 kb on - strand at 205.240 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 201,918 - BWI76_RS00985 0.19 +0.8 201,928 - BWI76_RS00985 0.20 -3.0 201,974 + BWI76_RS00985 0.25 +1.7 202,030 - BWI76_RS00985 0.31 -1.6 202,043 - BWI76_RS00985 0.33 -2.5 202,101 - BWI76_RS00985 0.39 -1.1 202,114 + BWI76_RS00985 0.41 -1.0 202,114 + BWI76_RS00985 0.41 -0.4 202,177 + BWI76_RS00985 0.48 -1.9 202,264 + BWI76_RS00985 0.58 +0.2 202,444 + BWI76_RS00985 0.78 -0.4 202,515 + BWI76_RS00985 0.86 -0.9 202,560 + -0.2 202,610 + +0.4 202,625 - +0.9 202,796 + +0.4 202,862 - -1.3 202,960 + BWI76_RS00990 0.11 +0.4 202,968 - BWI76_RS00990 0.11 -1.8 202,971 + BWI76_RS00990 0.11 -1.1 202,976 + BWI76_RS00990 0.12 -1.4 203,048 - BWI76_RS00990 0.17 -0.4 203,182 + BWI76_RS00990 0.26 -0.8 203,379 + BWI76_RS00990 0.39 +0.3 203,617 - BWI76_RS00990 0.55 +0.4 203,617 - BWI76_RS00990 0.55 -1.1 203,709 + BWI76_RS00990 0.61 -2.0 204,075 - +1.4 204,167 + -3.2 204,305 + +0.2 204,306 + +0.2 204,330 + -2.4 204,458 + BWI76_RS00995 0.28 -0.6 204,466 - BWI76_RS00995 0.30 -2.8 204,496 - BWI76_RS00995 0.41 +0.1 204,720 - +1.2 204,783 - BWI76_RS01000 0.24 +0.4 204,800 - +1.4 204,819 + BWI76_RS01000 0.37 -1.2 204,906 + BWI76_RS01000 0.68 +0.2 204,936 - BWI76_RS01000 0.79 +1.2 204,948 + BWI76_RS01000 0.83 +0.2 204,977 - +1.3 204,977 - +0.2 205,053 + -2.7 205,053 + -1.0 205,145 + -0.2 205,163 + -2.7 205,163 + -0.4 205,165 + -0.6 205,165 + +0.3 205,166 - +0.4 205,240 + -2.6
Or see this region's nucleotide sequence