Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02986 and SMc02987 are separated by 124 nucleotides SMc02987 and SMc02988 overlap by 1 nucleotides SMc02988 and SMc02989 are separated by 171 nucleotides SMc02989 and SMc03151 overlap by 4 nucleotides SMc03151 and SMc03152 are separated by 117 nucleotides
SMc02986: SMc02986 - hypothetical protein, at 3,107,289 to 3,108,323
SMc02986
SMc02987: SMc02987 - hypothetical protein, at 3,108,448 to 3,108,891
SMc02987
SMc02988: SMc02988 - hypothetical protein, at 3,108,891 to 3,109,130
SMc02988
SMc02989: SMc02989 - hypothetical protein, at 3,109,302 to 3,109,514
SMc02989
SMc03151: SMc03151 - hypothetical protein, at 3,109,511 to 3,110,209
SMc03151
SMc03152: SMc03152 - hypothetical protein, at 3,110,327 to 3,111,031
SMc03152
Position (kb)
3109
3110 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3108.326 kb on + strand at 3108.408 kb on - strand at 3108.408 kb on - strand at 3108.449 kb on + strand at 3108.449 kb on + strand at 3108.449 kb on + strand at 3108.450 kb on - strand at 3108.456 kb on + strand at 3108.456 kb on + strand at 3108.457 kb on - strand at 3108.474 kb on + strand at 3108.476 kb on + strand at 3108.476 kb on + strand at 3108.477 kb on - strand at 3108.496 kb on - strand, within SMc02987 at 3108.498 kb on - strand, within SMc02987 at 3108.498 kb on - strand, within SMc02987 at 3108.510 kb on + strand, within SMc02987 at 3108.511 kb on - strand, within SMc02987 at 3108.515 kb on + strand, within SMc02987 at 3108.516 kb on - strand, within SMc02987 at 3108.757 kb on + strand, within SMc02987 at 3108.791 kb on + strand, within SMc02987 at 3108.791 kb on + strand, within SMc02987 at 3108.792 kb on - strand, within SMc02987 at 3108.792 kb on - strand, within SMc02987 at 3108.792 kb on - strand, within SMc02987 at 3108.792 kb on - strand, within SMc02987 at 3108.794 kb on + strand, within SMc02987 at 3108.794 kb on + strand, within SMc02987 at 3108.795 kb on - strand, within SMc02987 at 3108.795 kb on - strand, within SMc02987 at 3108.795 kb on - strand, within SMc02987 at 3108.873 kb on - strand at 3109.010 kb on + strand, within SMc02988 at 3109.010 kb on + strand, within SMc02988 at 3109.010 kb on + strand, within SMc02988 at 3109.010 kb on + strand, within SMc02988 at 3109.020 kb on + strand, within SMc02988 at 3109.120 kb on + strand at 3109.120 kb on + strand at 3109.121 kb on - strand at 3109.121 kb on - strand at 3109.131 kb on - strand at 3109.135 kb on + strand at 3109.135 kb on + strand at 3109.136 kb on - strand at 3109.136 kb on - strand at 3109.136 kb on - strand at 3109.154 kb on + strand at 3109.156 kb on + strand at 3109.156 kb on + strand at 3109.157 kb on - strand at 3109.160 kb on - strand at 3109.160 kb on - strand at 3109.174 kb on - strand at 3109.193 kb on + strand at 3109.193 kb on + strand at 3109.194 kb on - strand at 3109.194 kb on - strand at 3109.272 kb on + strand at 3109.273 kb on - strand at 3109.277 kb on + strand at 3109.277 kb on + strand at 3109.278 kb on - strand at 3109.368 kb on + strand, within SMc02989 at 3109.368 kb on + strand, within SMc02989 at 3109.369 kb on - strand, within SMc02989 at 3109.920 kb on + strand, within SMc03151 at 3109.920 kb on + strand, within SMc03151 at 3109.921 kb on - strand, within SMc03151 at 3109.921 kb on - strand, within SMc03151 at 3109.921 kb on - strand, within SMc03151 at 3110.024 kb on + strand, within SMc03151 at 3110.025 kb on - strand, within SMc03151 at 3110.053 kb on - strand, within SMc03151 at 3110.127 kb on + strand, within SMc03151 at 3110.128 kb on - strand, within SMc03151 at 3110.146 kb on - strand at 3110.146 kb on - strand at 3110.146 kb on - strand at 3110.146 kb on - strand at 3110.243 kb on + strand at 3110.467 kb on + strand, within SMc03152 at 3110.467 kb on + strand, within SMc03152 at 3110.468 kb on - strand, within SMc03152 at 3110.468 kb on - strand, within SMc03152 at 3110.469 kb on + strand, within SMc03152 at 3110.469 kb on + strand, within SMc03152 at 3110.469 kb on + strand, within SMc03152 at 3110.469 kb on + strand, within SMc03152 at 3110.469 kb on + strand, within SMc03152 at 3110.469 kb on + strand, within SMc03152 at 3110.470 kb on - strand, within SMc03152 at 3110.470 kb on - strand, within SMc03152
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 3,108,326 + -0.2 3,108,408 - +0.1 3,108,408 - -1.4 3,108,449 + +0.3 3,108,449 + +0.7 3,108,449 + +0.1 3,108,450 - +0.0 3,108,456 + -0.4 3,108,456 + +0.2 3,108,457 - -0.2 3,108,474 + +0.7 3,108,476 + -0.9 3,108,476 + -0.4 3,108,477 - +0.5 3,108,496 - SMc02987 0.11 -1.4 3,108,498 - SMc02987 0.11 -0.0 3,108,498 - SMc02987 0.11 +0.0 3,108,510 + SMc02987 0.14 +1.4 3,108,511 - SMc02987 0.14 -0.5 3,108,515 + SMc02987 0.15 +1.0 3,108,516 - SMc02987 0.15 -0.7 3,108,757 + SMc02987 0.70 -0.0 3,108,791 + SMc02987 0.77 -0.1 3,108,791 + SMc02987 0.77 -5.2 3,108,792 - SMc02987 0.77 +0.4 3,108,792 - SMc02987 0.77 +0.1 3,108,792 - SMc02987 0.77 -0.7 3,108,792 - SMc02987 0.77 -0.2 3,108,794 + SMc02987 0.78 +0.3 3,108,794 + SMc02987 0.78 -0.2 3,108,795 - SMc02987 0.78 +0.1 3,108,795 - SMc02987 0.78 +0.0 3,108,795 - SMc02987 0.78 -1.6 3,108,873 - -1.4 3,109,010 + SMc02988 0.50 -1.4 3,109,010 + SMc02988 0.50 +0.5 3,109,010 + SMc02988 0.50 +0.1 3,109,010 + SMc02988 0.50 -0.5 3,109,020 + SMc02988 0.54 -0.2 3,109,120 + +0.0 3,109,120 + -0.5 3,109,121 - +0.3 3,109,121 - -0.5 3,109,131 - +0.2 3,109,135 + +0.2 3,109,135 + +0.2 3,109,136 - +0.4 3,109,136 - -0.4 3,109,136 - +0.1 3,109,154 + -0.3 3,109,156 + -0.1 3,109,156 + +0.4 3,109,157 - +0.1 3,109,160 - +1.1 3,109,160 - +0.6 3,109,174 - +0.7 3,109,193 + -0.6 3,109,193 + -0.2 3,109,194 - +0.3 3,109,194 - +0.5 3,109,272 + +0.4 3,109,273 - +0.4 3,109,277 + -0.0 3,109,277 + -0.6 3,109,278 - +0.1 3,109,368 + SMc02989 0.31 -0.4 3,109,368 + SMc02989 0.31 -1.1 3,109,369 - SMc02989 0.31 -1.1 3,109,920 + SMc03151 0.59 +0.4 3,109,920 + SMc03151 0.59 -0.2 3,109,921 - SMc03151 0.59 +0.3 3,109,921 - SMc03151 0.59 -0.2 3,109,921 - SMc03151 0.59 -1.3 3,110,024 + SMc03151 0.73 +0.0 3,110,025 - SMc03151 0.74 -0.2 3,110,053 - SMc03151 0.78 -0.5 3,110,127 + SMc03151 0.88 +0.2 3,110,128 - SMc03151 0.88 -0.1 3,110,146 - +0.1 3,110,146 - -0.9 3,110,146 - +0.5 3,110,146 - -0.4 3,110,243 + -0.0 3,110,467 + SMc03152 0.20 -0.3 3,110,467 + SMc03152 0.20 +0.1 3,110,468 - SMc03152 0.20 -0.9 3,110,468 - SMc03152 0.20 +0.6 3,110,469 + SMc03152 0.20 -0.2 3,110,469 + SMc03152 0.20 -0.0 3,110,469 + SMc03152 0.20 -0.2 3,110,469 + SMc03152 0.20 -0.9 3,110,469 + SMc03152 0.20 -0.0 3,110,469 + SMc03152 0.20 +0.2 3,110,470 - SMc03152 0.20 -0.1 3,110,470 - SMc03152 0.20 -0.0
Or see this region's nucleotide sequence