Strain Fitness in Sinorhizobium meliloti 1021 around SMc02304

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04430 and SMc02303 are separated by 143 nucleotidesSMc02303 and SMc02208 are separated by 252 nucleotidesSMc02208 and SMc02304 are separated by 261 nucleotidesSMc02304 and SMc02305 are separated by 170 nucleotides SMc04430: SMc04430 - transposase number 1 for insertion sequence ISRM30, at 676,470 to 676,640 SMc04430 SMc02303: SMc02303 - partial transposase for insertion sequence element ISRM1, at 676,784 to 676,966 SMc02303 SMc02208: SMc02208 - tRNA-Thr, at 677,219 to 677,293 SMc02208 SMc02304: SMc02304 - hypothetical protein, at 677,555 to 677,770 SMc02304 SMc02305: SMc02305 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 677,941 to 679,233 SMc02305 Position (kb) 677 678Strain fitness (log2 ratio) -1 0 1 2at 676.821 kb on - strand, within SMc02303at 677.000 kb on + strandat 677.000 kb on + strandat 677.000 kb on + strandat 677.001 kb on - strandat 677.042 kb on + strandat 677.085 kb on - strandat 677.085 kb on - strandat 677.085 kb on - strandat 677.145 kb on - strandat 677.581 kb on + strand, within SMc02304at 677.581 kb on + strand, within SMc02304at 677.582 kb on - strand, within SMc02304at 677.582 kb on - strand, within SMc02304at 677.768 kb on + strandat 677.769 kb on - strandat 677.864 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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676,821 - SMc02303 0.20 -0.2
677,000 + +0.7
677,000 + +2.5
677,000 + -0.8
677,001 - +0.2
677,042 + +0.1
677,085 - -0.3
677,085 - -0.1
677,085 - -0.1
677,145 - +0.7
677,581 + SMc02304 0.12 -1.5
677,581 + SMc02304 0.12 -0.0
677,582 - SMc02304 0.12 -0.4
677,582 - SMc02304 0.12 -0.7
677,768 + -0.3
677,769 - -0.1
677,864 + -0.2

Or see this region's nucleotide sequence