Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01360 and SMc01359 are separated by 142 nucleotides SMc01359 and SMc01358 overlap by 19 nucleotides
SMc01360: SMc01360 - aspartate carbamoyltransferase catalytic subunit, at 1,422,972 to 1,423,913
SMc01360
SMc01359: SMc01359 - oxidoreductase, at 1,424,056 to 1,425,708
SMc01359
SMc01358: SMc01358 - hypothetical protein, at 1,425,690 to 1,426,625
SMc01358
Position (kb)
1424
1425
1426 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1423.181 kb on - strand, within SMc01360 at 1423.181 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.184 kb on - strand, within SMc01360 at 1423.193 kb on - strand, within SMc01360 at 1424.044 kb on + strand at 1425.706 kb on + strand at 1425.707 kb on - strand at 1425.707 kb on - strand at 1425.733 kb on - strand at 1425.733 kb on - strand at 1426.067 kb on - strand, within SMc01358 at 1426.096 kb on - strand, within SMc01358 at 1426.096 kb on - strand, within SMc01358 at 1426.196 kb on + strand, within SMc01358 at 1426.197 kb on - strand, within SMc01358 at 1426.197 kb on - strand, within SMc01358 at 1426.197 kb on - strand, within SMc01358 at 1426.201 kb on + strand, within SMc01358 at 1426.201 kb on + strand, within SMc01358 at 1426.270 kb on - strand, within SMc01358 at 1426.334 kb on + strand, within SMc01358 at 1426.334 kb on + strand, within SMc01358 at 1426.335 kb on - strand, within SMc01358 at 1426.335 kb on - strand, within SMc01358 at 1426.335 kb on - strand, within SMc01358 at 1426.533 kb on + strand at 1426.673 kb on + strand at 1426.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 1,423,181 - SMc01360 0.22 -3.0 1,423,181 - SMc01360 0.22 -5.1 1,423,184 - SMc01360 0.23 -3.6 1,423,184 - SMc01360 0.23 -2.1 1,423,184 - SMc01360 0.23 -0.5 1,423,193 - SMc01360 0.23 -2.2 1,424,044 + -0.1 1,425,706 + +0.6 1,425,707 - -0.1 1,425,707 - -0.2 1,425,733 - -0.8 1,425,733 - +0.3 1,426,067 - SMc01358 0.40 -0.0 1,426,096 - SMc01358 0.43 -0.4 1,426,096 - SMc01358 0.43 -0.3 1,426,196 + SMc01358 0.54 -0.1 1,426,197 - SMc01358 0.54 -0.5 1,426,197 - SMc01358 0.54 -0.1 1,426,197 - SMc01358 0.54 +0.0 1,426,201 + SMc01358 0.55 +0.2 1,426,201 + SMc01358 0.55 -0.1 1,426,270 - SMc01358 0.62 +0.2 1,426,334 + SMc01358 0.69 -0.4 1,426,334 + SMc01358 0.69 +0.5 1,426,335 - SMc01358 0.69 +0.1 1,426,335 - SMc01358 0.69 +0.2 1,426,335 - SMc01358 0.69 +0.1 1,426,533 + -0.3 1,426,673 + +0.2 1,426,674 - -0.6
Or see this region's nucleotide sequence