Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00813 and SMc00814 are separated by 252 nucleotides SMc00814 and SMc00815 are separated by 190 nucleotides
SMc00813: SMc00813 - transport transmembrane protein, at 833,376 to 834,788
SMc00813
SMc00814: SMc00814 - signal peptide protein, at 835,041 to 836,021
SMc00814
SMc00815: SMc00815 - inosine 5'-monophosphate dehydrogenase, at 836,212 to 837,714
SMc00815
Position (kb) 835
836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.080 kb on + strand, within SMc00813 at 834.080 kb on + strand, within SMc00813 at 834.081 kb on - strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.086 kb on - strand, within SMc00813 at 834.215 kb on + strand, within SMc00813 at 834.256 kb on + strand, within SMc00813 at 834.256 kb on + strand, within SMc00813 at 834.257 kb on - strand, within SMc00813 at 834.328 kb on + strand, within SMc00813 at 834.328 kb on + strand, within SMc00813 at 834.328 kb on + strand, within SMc00813 at 834.337 kb on - strand, within SMc00813 at 834.337 kb on - strand, within SMc00813 at 834.519 kb on - strand, within SMc00813 at 834.644 kb on + strand, within SMc00813 at 834.644 kb on + strand, within SMc00813 at 834.646 kb on + strand, within SMc00813 at 834.646 kb on + strand, within SMc00813 at 834.646 kb on + strand, within SMc00813 at 834.647 kb on - strand at 834.647 kb on - strand at 834.647 kb on - strand at 834.723 kb on - strand at 835.118 kb on + strand at 835.118 kb on + strand at 835.119 kb on - strand at 835.452 kb on + strand, within SMc00814 at 835.452 kb on + strand, within SMc00814 at 835.453 kb on - strand, within SMc00814 at 835.506 kb on - strand, within SMc00814 at 835.506 kb on - strand, within SMc00814 at 835.554 kb on + strand, within SMc00814 at 835.555 kb on - strand, within SMc00814 at 835.555 kb on - strand, within SMc00814 at 835.576 kb on - strand, within SMc00814 at 835.745 kb on + strand, within SMc00814 at 835.745 kb on + strand, within SMc00814 at 835.745 kb on + strand, within SMc00814 at 835.745 kb on + strand, within SMc00814 at 835.745 kb on + strand, within SMc00814 at 835.745 kb on + strand, within SMc00814 at 835.746 kb on - strand, within SMc00814 at 835.753 kb on - strand, within SMc00814 at 835.809 kb on + strand, within SMc00814 at 835.810 kb on - strand, within SMc00814 at 835.810 kb on - strand, within SMc00814 at 835.810 kb on - strand, within SMc00814 at 835.810 kb on - strand, within SMc00814 at 835.984 kb on - strand at 836.004 kb on + strand at 836.005 kb on - strand at 836.110 kb on + strand at 836.955 kb on + strand, within SMc00815
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 834,080 + SMc00813 0.50 -0.2 834,080 + SMc00813 0.50 -1.0 834,081 - SMc00813 0.50 -0.4 834,082 + SMc00813 0.50 +0.0 834,082 + SMc00813 0.50 -0.1 834,082 + SMc00813 0.50 +0.4 834,083 - SMc00813 0.50 -0.5 834,083 - SMc00813 0.50 -0.8 834,083 - SMc00813 0.50 +0.2 834,083 - SMc00813 0.50 +0.1 834,083 - SMc00813 0.50 +0.1 834,086 - SMc00813 0.50 -0.1 834,215 + SMc00813 0.59 -0.5 834,256 + SMc00813 0.62 +0.3 834,256 + SMc00813 0.62 +0.8 834,257 - SMc00813 0.62 -0.7 834,328 + SMc00813 0.67 -0.7 834,328 + SMc00813 0.67 -0.8 834,328 + SMc00813 0.67 +1.5 834,337 - SMc00813 0.68 +0.3 834,337 - SMc00813 0.68 +0.5 834,519 - SMc00813 0.81 -0.1 834,644 + SMc00813 0.90 -0.3 834,644 + SMc00813 0.90 -2.8 834,646 + SMc00813 0.90 -0.2 834,646 + SMc00813 0.90 +1.2 834,646 + SMc00813 0.90 +0.3 834,647 - +0.0 834,647 - -0.6 834,647 - +0.2 834,723 - +0.2 835,118 + -0.6 835,118 + +0.6 835,119 - -0.6 835,452 + SMc00814 0.42 -0.2 835,452 + SMc00814 0.42 +0.0 835,453 - SMc00814 0.42 -0.5 835,506 - SMc00814 0.47 +0.2 835,506 - SMc00814 0.47 -0.7 835,554 + SMc00814 0.52 +0.1 835,555 - SMc00814 0.52 +0.6 835,555 - SMc00814 0.52 +0.0 835,576 - SMc00814 0.55 +0.5 835,745 + SMc00814 0.72 +0.8 835,745 + SMc00814 0.72 +0.1 835,745 + SMc00814 0.72 -0.2 835,745 + SMc00814 0.72 +0.1 835,745 + SMc00814 0.72 +0.2 835,745 + SMc00814 0.72 +0.2 835,746 - SMc00814 0.72 -0.0 835,753 - SMc00814 0.73 +0.5 835,809 + SMc00814 0.78 -0.8 835,810 - SMc00814 0.78 +0.6 835,810 - SMc00814 0.78 +0.3 835,810 - SMc00814 0.78 +0.1 835,810 - SMc00814 0.78 -0.9 835,984 - -0.1 836,004 + +0.3 836,005 - -0.1 836,110 + +0.1 836,955 + SMc00815 0.49 -2.6
Or see this region's nucleotide sequence