Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1864 and SMa1867 are separated by 108 nucleotides SMa1867 and SMa1869 are separated by 235 nucleotides
SMa1864: SMa1864 - ABC transporter ATP-binding protein, at 1,058,447 to 1,060,102
SMa1864
SMa1867: SMa1867 - AsnC family transcriptional regulator, at 1,060,211 to 1,060,687
SMa1867
SMa1869: SMa1869 - deaminase, at 1,060,923 to 1,062,248
SMa1869
Position (kb)
1060
1061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1059.372 kb on - strand, within SMa1864 at 1059.447 kb on + strand, within SMa1864 at 1059.555 kb on - strand, within SMa1864 at 1059.620 kb on + strand, within SMa1864 at 1059.620 kb on + strand, within SMa1864 at 1059.621 kb on - strand, within SMa1864 at 1059.879 kb on - strand, within SMa1864 at 1059.941 kb on + strand at 1059.941 kb on + strand at 1059.941 kb on + strand at 1059.941 kb on + strand at 1059.942 kb on - strand at 1059.942 kb on - strand at 1059.942 kb on - strand at 1059.942 kb on - strand at 1059.982 kb on + strand at 1060.001 kb on + strand at 1060.001 kb on + strand at 1060.002 kb on - strand at 1060.088 kb on + strand at 1060.089 kb on - strand at 1060.147 kb on - strand at 1060.147 kb on - strand at 1060.284 kb on + strand, within SMa1867 at 1060.335 kb on + strand, within SMa1867 at 1060.372 kb on - strand, within SMa1867 at 1060.378 kb on - strand, within SMa1867 at 1060.378 kb on - strand, within SMa1867 at 1060.533 kb on + strand, within SMa1867 at 1060.543 kb on + strand, within SMa1867 at 1060.544 kb on - strand, within SMa1867 at 1060.546 kb on - strand, within SMa1867 at 1060.546 kb on - strand, within SMa1867 at 1060.546 kb on - strand, within SMa1867 at 1060.762 kb on - strand at 1061.023 kb on - strand at 1061.229 kb on + strand, within SMa1869 at 1061.300 kb on - strand, within SMa1869 at 1061.309 kb on + strand, within SMa1869 at 1061.309 kb on + strand, within SMa1869 at 1061.310 kb on - strand, within SMa1869
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 1,059,372 - SMa1864 0.56 -1.0 1,059,447 + SMa1864 0.60 -0.8 1,059,555 - SMa1864 0.67 -1.5 1,059,620 + SMa1864 0.71 +1.0 1,059,620 + SMa1864 0.71 -0.2 1,059,621 - SMa1864 0.71 -0.8 1,059,879 - SMa1864 0.86 -0.5 1,059,941 + -0.6 1,059,941 + -0.0 1,059,941 + -0.5 1,059,941 + +0.2 1,059,942 - +0.4 1,059,942 - +0.4 1,059,942 - -0.3 1,059,942 - -0.0 1,059,982 + +0.3 1,060,001 + +1.1 1,060,001 + +0.1 1,060,002 - -0.6 1,060,088 + -0.6 1,060,089 - -1.3 1,060,147 - +0.6 1,060,147 - -0.8 1,060,284 + SMa1867 0.15 +0.2 1,060,335 + SMa1867 0.26 +0.1 1,060,372 - SMa1867 0.34 +0.5 1,060,378 - SMa1867 0.35 +0.3 1,060,378 - SMa1867 0.35 -0.2 1,060,533 + SMa1867 0.68 +0.0 1,060,543 + SMa1867 0.70 +2.4 1,060,544 - SMa1867 0.70 +0.2 1,060,546 - SMa1867 0.70 +0.3 1,060,546 - SMa1867 0.70 +0.5 1,060,546 - SMa1867 0.70 +1.4 1,060,762 - -3.0 1,061,023 - +1.3 1,061,229 + SMa1869 0.23 +0.2 1,061,300 - SMa1869 0.28 -0.2 1,061,309 + SMa1869 0.29 -0.4 1,061,309 + SMa1869 0.29 -0.3 1,061,310 - SMa1869 0.29 +0.5
Or see this region's nucleotide sequence