Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20634 and SM_b21706 are separated by 52 nucleotides SM_b21706 and SM_b20636 are separated by 455 nucleotides
SM_b20634: SM_b20634 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,653,927 to 1,655,162
_b20634
SM_b21706: SM_b21706 - LacI family transcriptional regulator, at 1,655,215 to 1,656,018
_b21706
SM_b20636: SM_b20636 - transposase of insertion sequence ISRm19 protein, at 1,656,474 to 1,657,487
_b20636
Position (kb)
1655
1656
1657 Strain fitness (log2 ratio)
-1
0
1 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.215 kb on - strand, within SM_b20634 at 1654.216 kb on + strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.217 kb on - strand, within SM_b20634 at 1654.369 kb on - strand, within SM_b20634 at 1654.517 kb on + strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.628 kb on - strand, within SM_b20634 at 1654.636 kb on + strand, within SM_b20634 at 1654.733 kb on - strand, within SM_b20634 at 1654.786 kb on + strand, within SM_b20634 at 1654.787 kb on - strand, within SM_b20634 at 1654.787 kb on - strand, within SM_b20634 at 1654.787 kb on - strand, within SM_b20634 at 1654.787 kb on - strand, within SM_b20634 at 1654.801 kb on + strand, within SM_b20634 at 1654.843 kb on + strand, within SM_b20634 at 1654.844 kb on - strand, within SM_b20634 at 1654.967 kb on - strand, within SM_b20634 at 1654.967 kb on - strand, within SM_b20634 at 1655.033 kb on - strand, within SM_b20634 at 1655.783 kb on + strand, within SM_b21706 at 1655.783 kb on + strand, within SM_b21706 at 1655.784 kb on - strand, within SM_b21706 at 1655.784 kb on - strand, within SM_b21706 at 1655.784 kb on - strand, within SM_b21706 at 1655.920 kb on + strand, within SM_b21706 at 1655.921 kb on - strand, within SM_b21706 at 1655.921 kb on - strand, within SM_b21706 at 1655.921 kb on - strand, within SM_b21706 at 1656.002 kb on + strand at 1656.002 kb on + strand at 1656.002 kb on + strand at 1656.002 kb on + strand at 1656.003 kb on - strand at 1656.003 kb on - strand at 1656.003 kb on - strand at 1656.382 kb on - strand at 1656.416 kb on + strand at 1656.417 kb on - strand at 1656.471 kb on - strand at 1656.471 kb on - strand at 1656.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 1,654,215 - SM_b20634 0.23 +0.1 1,654,215 - SM_b20634 0.23 -0.3 1,654,215 - SM_b20634 0.23 -0.1 1,654,215 - SM_b20634 0.23 +0.3 1,654,215 - SM_b20634 0.23 -0.1 1,654,216 + SM_b20634 0.23 -0.3 1,654,217 - SM_b20634 0.23 +0.0 1,654,217 - SM_b20634 0.23 +0.2 1,654,217 - SM_b20634 0.23 -0.1 1,654,369 - SM_b20634 0.36 -0.8 1,654,517 + SM_b20634 0.48 +0.3 1,654,628 - SM_b20634 0.57 -0.5 1,654,628 - SM_b20634 0.57 -0.1 1,654,628 - SM_b20634 0.57 -0.1 1,654,636 + SM_b20634 0.57 -0.2 1,654,733 - SM_b20634 0.65 +0.2 1,654,786 + SM_b20634 0.69 +0.9 1,654,787 - SM_b20634 0.70 +0.2 1,654,787 - SM_b20634 0.70 +0.2 1,654,787 - SM_b20634 0.70 +0.4 1,654,787 - SM_b20634 0.70 -0.1 1,654,801 + SM_b20634 0.71 -0.1 1,654,843 + SM_b20634 0.74 +0.4 1,654,844 - SM_b20634 0.74 +0.1 1,654,967 - SM_b20634 0.84 +0.7 1,654,967 - SM_b20634 0.84 +0.3 1,655,033 - SM_b20634 0.89 +1.7 1,655,783 + SM_b21706 0.71 -0.2 1,655,783 + SM_b21706 0.71 +0.0 1,655,784 - SM_b21706 0.71 -0.4 1,655,784 - SM_b21706 0.71 +0.2 1,655,784 - SM_b21706 0.71 +0.0 1,655,920 + SM_b21706 0.88 -0.8 1,655,921 - SM_b21706 0.88 -1.1 1,655,921 - SM_b21706 0.88 +0.4 1,655,921 - SM_b21706 0.88 -1.6 1,656,002 + -0.6 1,656,002 + -0.2 1,656,002 + -1.1 1,656,002 + -0.6 1,656,003 - +0.0 1,656,003 - +0.2 1,656,003 - +0.3 1,656,382 - +0.5 1,656,416 + +0.5 1,656,417 - +0.1 1,656,471 - -0.0 1,656,471 - -0.8 1,656,476 - -0.6
Or see this region's nucleotide sequence