Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20894

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20893 and SM_b20894 overlap by 1 nucleotidesSM_b20894 and SM_b20895 are separated by 207 nucleotides SM_b20893: SM_b20893 - sugar uptake ABC transporter permease, at 1,300,085 to 1,301,299 _b20893 SM_b20894: SM_b20894 - L-arabinose ABC transporter, ATPase component (from data), at 1,301,299 to 1,302,819 _b20894 SM_b20895: SM_b20895 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,303,027 to 1,304,094 _b20895 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -2 -1 0 1 2at 1300.401 kb on + strand, within SM_b20893at 1300.401 kb on + strand, within SM_b20893at 1300.402 kb on - strand, within SM_b20893at 1300.402 kb on - strand, within SM_b20893at 1300.402 kb on - strand, within SM_b20893at 1300.402 kb on - strand, within SM_b20893at 1300.421 kb on - strand, within SM_b20893at 1300.467 kb on + strand, within SM_b20893at 1300.468 kb on - strand, within SM_b20893at 1300.468 kb on - strand, within SM_b20893at 1300.468 kb on - strand, within SM_b20893at 1300.469 kb on + strand, within SM_b20893at 1300.470 kb on - strand, within SM_b20893at 1300.509 kb on + strand, within SM_b20893at 1300.509 kb on + strand, within SM_b20893at 1300.510 kb on - strand, within SM_b20893at 1300.510 kb on - strand, within SM_b20893at 1300.539 kb on - strand, within SM_b20893at 1300.539 kb on - strand, within SM_b20893at 1300.539 kb on - strand, within SM_b20893at 1300.560 kb on + strand, within SM_b20893at 1300.698 kb on + strand, within SM_b20893at 1300.770 kb on + strand, within SM_b20893at 1300.854 kb on + strand, within SM_b20893at 1300.854 kb on + strand, within SM_b20893at 1300.854 kb on + strand, within SM_b20893at 1300.854 kb on + strand, within SM_b20893at 1300.854 kb on + strand, within SM_b20893at 1300.854 kb on + strand, within SM_b20893at 1300.855 kb on - strand, within SM_b20893at 1300.855 kb on - strand, within SM_b20893at 1300.855 kb on - strand, within SM_b20893at 1300.855 kb on - strand, within SM_b20893at 1300.855 kb on - strand, within SM_b20893at 1300.929 kb on + strand, within SM_b20893at 1300.930 kb on - strand, within SM_b20893at 1300.951 kb on + strand, within SM_b20893at 1301.250 kb on + strandat 1301.251 kb on - strandat 1301.251 kb on - strandat 1301.251 kb on - strandat 1301.301 kb on - strandat 1301.399 kb on + strandat 1301.399 kb on + strandat 1301.399 kb on + strandat 1301.399 kb on + strandat 1301.400 kb on - strandat 1301.400 kb on - strandat 1301.400 kb on - strandat 1301.400 kb on - strandat 1301.400 kb on - strandat 1301.400 kb on - strandat 1301.492 kb on + strand, within SM_b20894at 1301.492 kb on + strand, within SM_b20894at 1301.492 kb on + strand, within SM_b20894at 1301.492 kb on + strand, within SM_b20894at 1301.492 kb on + strand, within SM_b20894at 1301.492 kb on + strandat 1301.493 kb on - strand, within SM_b20894at 1301.627 kb on + strand, within SM_b20894at 1301.627 kb on + strand, within SM_b20894at 1301.797 kb on + strand, within SM_b20894at 1301.797 kb on + strand, within SM_b20894at 1301.801 kb on + strand, within SM_b20894at 1301.802 kb on - strand, within SM_b20894at 1302.026 kb on + strand, within SM_b20894at 1302.026 kb on + strand, within SM_b20894at 1302.027 kb on - strand, within SM_b20894at 1302.639 kb on - strand, within SM_b20894at 1302.657 kb on - strand, within SM_b20894at 1302.657 kb on - strand, within SM_b20894at 1302.802 kb on + strandat 1302.803 kb on - strandat 1302.826 kb on + strandat 1302.827 kb on - strandat 1302.827 kb on - strandat 1302.827 kb on - strandat 1302.827 kb on - strandat 1302.835 kb on + strandat 1302.835 kb on + strandat 1302.982 kb on + strandat 1302.983 kb on - strandat 1303.052 kb on + strandat 1303.053 kb on - strandat 1303.053 kb on - strandat 1303.148 kb on + strand, within SM_b20895at 1303.148 kb on + strand, within SM_b20895at 1303.149 kb on - strand, within SM_b20895at 1303.149 kb on - strand, within SM_b20895at 1303.149 kb on - strand, within SM_b20895at 1303.254 kb on - strand, within SM_b20895at 1303.423 kb on - strand, within SM_b20895at 1303.715 kb on + strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.716 kb on - strand, within SM_b20895at 1303.718 kb on + strand, within SM_b20895at 1303.754 kb on + strand, within SM_b20895at 1303.755 kb on - strand, within SM_b20895

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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1,300,401 + SM_b20893 0.26 +0.1
1,300,401 + SM_b20893 0.26 +0.0
1,300,402 - SM_b20893 0.26 -0.1
1,300,402 - SM_b20893 0.26 -0.0
1,300,402 - SM_b20893 0.26 -0.1
1,300,402 - SM_b20893 0.26 -0.1
1,300,421 - SM_b20893 0.28 -0.5
1,300,467 + SM_b20893 0.31 -0.0
1,300,468 - SM_b20893 0.32 +0.2
1,300,468 - SM_b20893 0.32 +0.5
1,300,468 - SM_b20893 0.32 -0.1
1,300,469 + SM_b20893 0.32 +0.3
1,300,470 - SM_b20893 0.32 -0.4
1,300,509 + SM_b20893 0.35 -0.0
1,300,509 + SM_b20893 0.35 +0.2
1,300,510 - SM_b20893 0.35 +0.5
1,300,510 - SM_b20893 0.35 +0.3
1,300,539 - SM_b20893 0.37 +0.0
1,300,539 - SM_b20893 0.37 +0.0
1,300,539 - SM_b20893 0.37 +0.2
1,300,560 + SM_b20893 0.39 -0.0
1,300,698 + SM_b20893 0.50 -1.0
1,300,770 + SM_b20893 0.56 -0.4
1,300,854 + SM_b20893 0.63 -0.3
1,300,854 + SM_b20893 0.63 -0.3
1,300,854 + SM_b20893 0.63 +0.6
1,300,854 + SM_b20893 0.63 +0.7
1,300,854 + SM_b20893 0.63 +0.3
1,300,854 + SM_b20893 0.63 -0.3
1,300,855 - SM_b20893 0.63 +0.2
1,300,855 - SM_b20893 0.63 -0.6
1,300,855 - SM_b20893 0.63 -0.2
1,300,855 - SM_b20893 0.63 -0.1
1,300,855 - SM_b20893 0.63 +0.4
1,300,929 + SM_b20893 0.69 +0.4
1,300,930 - SM_b20893 0.70 -0.1
1,300,951 + SM_b20893 0.71 -0.4
1,301,250 + -0.1
1,301,251 - +0.2
1,301,251 - -0.5
1,301,251 - +0.1
1,301,301 - +0.3
1,301,399 + +1.0
1,301,399 + -0.3
1,301,399 + -0.2
1,301,399 + +0.2
1,301,400 - -0.2
1,301,400 - -1.5
1,301,400 - -0.5
1,301,400 - -0.5
1,301,400 - -0.9
1,301,400 - -0.1
1,301,492 + SM_b20894 0.13 +0.1
1,301,492 + SM_b20894 0.13 +0.9
1,301,492 + SM_b20894 0.13 -0.0
1,301,492 + SM_b20894 0.13 +2.0
1,301,492 + SM_b20894 0.13 -1.5
1,301,492 + +1.0
1,301,493 - SM_b20894 0.13 +0.0
1,301,627 + SM_b20894 0.22 -0.0
1,301,627 + SM_b20894 0.22 +0.9
1,301,797 + SM_b20894 0.33 +0.2
1,301,797 + SM_b20894 0.33 +0.3
1,301,801 + SM_b20894 0.33 -0.1
1,301,802 - SM_b20894 0.33 +1.1
1,302,026 + SM_b20894 0.48 +0.3
1,302,026 + SM_b20894 0.48 +1.7
1,302,027 - SM_b20894 0.48 -0.8
1,302,639 - SM_b20894 0.88 +0.4
1,302,657 - SM_b20894 0.89 -2.4
1,302,657 - SM_b20894 0.89 +0.1
1,302,802 + -0.6
1,302,803 - +0.1
1,302,826 + -1.2
1,302,827 - +0.3
1,302,827 - -0.2
1,302,827 - +0.1
1,302,827 - +0.5
1,302,835 + +0.5
1,302,835 + -0.3
1,302,982 + +1.3
1,302,983 - -1.9
1,303,052 + -0.0
1,303,053 - -0.8
1,303,053 - +0.6
1,303,148 + SM_b20895 0.11 -1.9
1,303,148 + SM_b20895 0.11 +0.1
1,303,149 - SM_b20895 0.11 +0.1
1,303,149 - SM_b20895 0.11 +0.4
1,303,149 - SM_b20895 0.11 -0.3
1,303,254 - SM_b20895 0.21 -0.5
1,303,423 - SM_b20895 0.37 -0.1
1,303,715 + SM_b20895 0.64 -0.7
1,303,716 - SM_b20895 0.65 -1.9
1,303,716 - SM_b20895 0.65 -0.5
1,303,716 - SM_b20895 0.65 -0.7
1,303,718 + SM_b20895 0.65 -1.3
1,303,754 + SM_b20895 0.68 +0.2
1,303,755 - SM_b20895 0.68 -0.1

Or see this region's nucleotide sequence