Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20879

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20877 and SM_b20878 are separated by 39 nucleotidesSM_b20878 and SM_b20879 are separated by 20 nucleotidesSM_b20879 and SM_b20880 are separated by 598 nucleotides SM_b20877: SM_b20877 - oxidoreductase, at 1,283,304 to 1,284,434 _b20877 SM_b20878: SM_b20878 - hypothetical protein, at 1,284,474 to 1,285,190 _b20878 SM_b20879: SM_b20879 - hypothetical protein, at 1,285,211 to 1,285,663 _b20879 SM_b20880: SM_b20880 - ATP-dependent RNA helicase, at 1,286,262 to 1,287,773 _b20880 Position (kb) 1285 1286Strain fitness (log2 ratio) -1 0 1at 1284.284 kb on + strand, within SM_b20877at 1284.284 kb on + strand, within SM_b20877at 1284.284 kb on + strand, within SM_b20877at 1284.285 kb on - strand, within SM_b20877at 1284.285 kb on - strand, within SM_b20877at 1284.462 kb on - strandat 1284.543 kb on - strandat 1284.543 kb on - strandat 1284.883 kb on + strand, within SM_b20878at 1284.908 kb on - strand, within SM_b20878at 1284.978 kb on + strand, within SM_b20878at 1285.395 kb on + strand, within SM_b20879at 1285.396 kb on - strand, within SM_b20879at 1285.396 kb on - strand, within SM_b20879at 1285.396 kb on - strand, within SM_b20879at 1285.462 kb on + strand, within SM_b20879at 1285.462 kb on + strand, within SM_b20879at 1285.462 kb on + strand, within SM_b20879at 1285.462 kb on + strand, within SM_b20879at 1285.463 kb on - strand, within SM_b20879at 1285.464 kb on + strand, within SM_b20879at 1285.465 kb on - strand, within SM_b20879at 1285.465 kb on - strand, within SM_b20879at 1285.465 kb on - strand, within SM_b20879at 1285.465 kb on - strand, within SM_b20879at 1285.465 kb on - strand, within SM_b20879at 1285.664 kb on + strandat 1285.664 kb on + strandat 1285.665 kb on - strandat 1285.690 kb on + strandat 1285.690 kb on + strandat 1285.690 kb on + strandat 1285.690 kb on + strandat 1285.690 kb on + strandat 1285.691 kb on - strandat 1285.750 kb on + strandat 1285.868 kb on + strandat 1285.868 kb on + strandat 1285.868 kb on + strandat 1285.869 kb on - strandat 1285.869 kb on - strandat 1285.964 kb on + strandat 1285.965 kb on - strandat 1286.030 kb on - strandat 1286.030 kb on - strandat 1286.153 kb on + strandat 1286.255 kb on - strandat 1286.257 kb on - strandat 1286.557 kb on + strand, within SM_b20880

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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1,284,284 + SM_b20877 0.87 +0.2
1,284,284 + SM_b20877 0.87 -0.6
1,284,284 + SM_b20877 0.87 -0.3
1,284,285 - SM_b20877 0.87 -0.1
1,284,285 - SM_b20877 0.87 -0.2
1,284,462 - +0.1
1,284,543 - -0.0
1,284,543 - +0.2
1,284,883 + SM_b20878 0.57 -0.1
1,284,908 - SM_b20878 0.61 +0.6
1,284,978 + SM_b20878 0.70 +0.1
1,285,395 + SM_b20879 0.41 -0.3
1,285,396 - SM_b20879 0.41 +0.9
1,285,396 - SM_b20879 0.41 +0.4
1,285,396 - SM_b20879 0.41 -0.7
1,285,462 + SM_b20879 0.55 +0.8
1,285,462 + SM_b20879 0.55 +0.3
1,285,462 + SM_b20879 0.55 +0.5
1,285,462 + SM_b20879 0.55 +0.1
1,285,463 - SM_b20879 0.56 -0.2
1,285,464 + SM_b20879 0.56 -0.1
1,285,465 - SM_b20879 0.56 -0.7
1,285,465 - SM_b20879 0.56 +0.9
1,285,465 - SM_b20879 0.56 +0.2
1,285,465 - SM_b20879 0.56 +1.1
1,285,465 - SM_b20879 0.56 +0.4
1,285,664 + +0.1
1,285,664 + +0.2
1,285,665 - +1.3
1,285,690 + +0.1
1,285,690 + +0.4
1,285,690 + +0.1
1,285,690 + -0.1
1,285,690 + +0.1
1,285,691 - +0.4
1,285,750 + -0.9
1,285,868 + +0.2
1,285,868 + -0.5
1,285,868 + +0.2
1,285,869 - +1.7
1,285,869 - -0.5
1,285,964 + +0.1
1,285,965 - +0.1
1,286,030 - +0.0
1,286,030 - +1.0
1,286,153 + +0.7
1,286,255 - -0.8
1,286,257 - -0.3
1,286,557 + SM_b20880 0.20 +0.3

Or see this region's nucleotide sequence