Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20549

Experiment: Mannobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20549 and SM_b20550 are separated by 167 nucleotidesSM_b20550 and SM_b20551 are separated by 173 nucleotides SM_b20549: SM_b20549 - hypothetical protein, at 576,048 to 576,365 _b20549 SM_b20550: SM_b20550 - hypothetical protein, at 576,533 to 576,778 _b20550 SM_b20551: SM_b20551 - hypothetical protein, at 576,952 to 577,398 _b20551 Position (kb) 576 577Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 575.146 kb on + strandat 575.147 kb on - strandat 575.189 kb on + strandat 575.279 kb on + strandat 575.280 kb on - strandat 575.289 kb on + strandat 575.289 kb on + strandat 575.289 kb on + strandat 575.290 kb on - strandat 575.290 kb on - strandat 575.365 kb on + strandat 575.365 kb on + strandat 575.366 kb on - strandat 575.366 kb on - strandat 575.366 kb on - strandat 575.433 kb on + strandat 575.433 kb on + strandat 575.433 kb on + strandat 575.434 kb on - strandat 575.446 kb on + strandat 575.446 kb on + strandat 575.447 kb on - strandat 575.447 kb on - strandat 575.569 kb on + strandat 575.570 kb on - strandat 575.570 kb on - strandat 575.574 kb on - strandat 575.574 kb on - strandat 575.783 kb on + strandat 575.783 kb on + strandat 575.783 kb on + strandat 575.784 kb on - strandat 575.890 kb on + strandat 575.890 kb on + strandat 575.890 kb on + strandat 575.891 kb on - strandat 575.999 kb on + strandat 576.078 kb on + strandat 576.078 kb on + strandat 576.079 kb on - strandat 576.079 kb on - strandat 576.079 kb on - strandat 576.151 kb on - strand, within SM_b20549at 576.151 kb on - strand, within SM_b20549at 576.151 kb on - strand, within SM_b20549at 576.151 kb on - strand, within SM_b20549at 576.406 kb on + strandat 576.407 kb on - strandat 576.407 kb on - strandat 576.407 kb on - strandat 576.546 kb on + strandat 576.572 kb on + strand, within SM_b20550at 576.602 kb on - strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.605 kb on + strand, within SM_b20550at 576.606 kb on - strand, within SM_b20550at 576.648 kb on + strand, within SM_b20550at 576.722 kb on + strandat 576.722 kb on + strand, within SM_b20550at 576.722 kb on + strand, within SM_b20550at 576.722 kb on + strand, within SM_b20550at 576.772 kb on + strandat 576.779 kb on + strandat 577.081 kb on - strand, within SM_b20551at 577.100 kb on + strand, within SM_b20551at 577.100 kb on + strandat 577.100 kb on + strand, within SM_b20551at 577.100 kb on + strand, within SM_b20551at 577.100 kb on + strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.101 kb on - strand, within SM_b20551at 577.129 kb on + strand, within SM_b20551at 577.129 kb on + strand, within SM_b20551at 577.129 kb on + strand, within SM_b20551at 577.130 kb on - strand, within SM_b20551at 577.130 kb on - strand, within SM_b20551at 577.178 kb on + strand, within SM_b20551at 577.179 kb on - strand, within SM_b20551at 577.179 kb on - strand, within SM_b20551at 577.189 kb on - strand, within SM_b20551at 577.270 kb on + strand, within SM_b20551

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Per-strain Table

Position Strand Gene LocusTag Fraction Mannobiose (C)
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575,146 + -0.1
575,147 - +1.0
575,189 + -0.9
575,279 + -0.5
575,280 - +0.2
575,289 + +0.3
575,289 + -0.9
575,289 + -0.7
575,290 - +0.2
575,290 - -0.2
575,365 + -0.1
575,365 + +2.3
575,366 - +0.1
575,366 - -0.3
575,366 - +0.9
575,433 + +0.3
575,433 + +0.1
575,433 + +0.2
575,434 - -0.2
575,446 + +0.3
575,446 + -0.4
575,447 - -0.0
575,447 - -1.0
575,569 + +0.7
575,570 - -1.4
575,570 - -0.6
575,574 - +0.7
575,574 - +0.3
575,783 + -0.3
575,783 + -0.5
575,783 + -1.9
575,784 - -5.0
575,890 + +0.6
575,890 + -0.6
575,890 + +2.0
575,891 - +0.6
575,999 + +0.1
576,078 + -0.1
576,078 + +0.2
576,079 - -0.1
576,079 - +0.4
576,079 - -0.4
576,151 - SM_b20549 0.32 -0.4
576,151 - SM_b20549 0.32 -2.7
576,151 - SM_b20549 0.32 -0.6
576,151 - SM_b20549 0.32 -1.1
576,406 + +0.1
576,407 - +1.4
576,407 - +1.0
576,407 - +0.7
576,546 + -0.9
576,572 + SM_b20550 0.16 +0.1
576,602 - SM_b20550 0.28 -0.0
576,605 + SM_b20550 0.29 +0.9
576,605 + SM_b20550 0.29 -1.1
576,605 + SM_b20550 0.29 -0.7
576,605 + SM_b20550 0.29 -0.1
576,605 + SM_b20550 0.29 +0.0
576,605 + SM_b20550 0.29 +0.0
576,605 + SM_b20550 0.29 +0.4
576,606 - SM_b20550 0.30 -0.0
576,648 + SM_b20550 0.47 +0.2
576,722 + +0.1
576,722 + SM_b20550 0.77 +0.2
576,722 + SM_b20550 0.77 +0.2
576,722 + SM_b20550 0.77 +0.4
576,772 + +0.1
576,779 + +0.1
577,081 - SM_b20551 0.29 +0.0
577,100 + SM_b20551 0.33 +0.8
577,100 + -0.5
577,100 + SM_b20551 0.33 +0.7
577,100 + SM_b20551 0.33 +0.3
577,100 + SM_b20551 0.33 -1.3
577,101 - SM_b20551 0.33 -1.8
577,101 - SM_b20551 0.33 -0.0
577,101 - SM_b20551 0.33 +1.3
577,101 - SM_b20551 0.33 -0.3
577,129 + SM_b20551 0.40 -0.2
577,129 + SM_b20551 0.40 +0.6
577,129 + SM_b20551 0.40 +0.5
577,130 - SM_b20551 0.40 +1.0
577,130 - SM_b20551 0.40 -0.6
577,178 + SM_b20551 0.51 +0.3
577,179 - SM_b20551 0.51 +0.4
577,179 - SM_b20551 0.51 +0.1
577,189 - SM_b20551 0.53 -0.3
577,270 + SM_b20551 0.71 -1.3

Or see this region's nucleotide sequence