Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13930

Experiment: Glucose (C) and nitrate (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with MOPS
3,132,191	+		PFLU_RS13920	0.73	+0.5
3,132,191	+		PFLU_RS13920	0.73	+0.3
3,132,350	-				-1.4
3,132,350	-				+1.3
3,132,371	+				-0.0
3,132,371	+				-0.3
3,132,372	-				-0.2
3,132,372	-				-0.6
3,132,399	+		PFLU_RS13925	0.10	+0.4
3,132,399	+		PFLU_RS13925	0.10	-0.2
3,132,399	+		PFLU_RS13925	0.10	+1.0
3,132,399	+		PFLU_RS13925	0.10	+0.7
3,132,400	-		PFLU_RS13925	0.10	+1.1
3,132,400	-		PFLU_RS13925	0.10	-1.4
3,132,512	+		PFLU_RS13925	0.31	+1.7
3,132,513	-		PFLU_RS13925	0.31	-0.0
3,132,513	-		PFLU_RS13925	0.31	-1.0
3,132,513	-		PFLU_RS13925	0.31	+0.8
3,132,516	+		PFLU_RS13925	0.32	+0.8
3,132,516	+		PFLU_RS13925	0.32	+2.1
3,132,516	+		PFLU_RS13925	0.32	-0.0
3,132,516	+		PFLU_RS13925	0.32	+0.4
3,132,516	+		PFLU_RS13925	0.32	-0.0
3,132,516	+		PFLU_RS13925	0.32	-0.6
3,132,517	-		PFLU_RS13925	0.32	+0.4
3,132,517	-		PFLU_RS13925	0.32	-0.0
3,132,517	-		PFLU_RS13925	0.32	+1.0
3,132,517	-		PFLU_RS13925	0.32	-0.3
3,132,727	+		PFLU_RS13925	0.70	-0.8
3,132,792	+		PFLU_RS13925	0.82	-0.2
3,132,799	-		PFLU_RS13925	0.84	+1.4
3,132,955	+				+0.3
3,132,955	+				+0.7
3,133,015	+		PFLU_RS13930	0.15	-0.7
3,133,062	+		PFLU_RS13930	0.21	-0.2
3,133,069	+		PFLU_RS13930	0.22	-0.5
3,133,069	+		PFLU_RS13930	0.22	+2.0
3,133,080	+		PFLU_RS13930	0.23	+2.5
3,133,081	-		PFLU_RS13930	0.23	-0.4
3,133,133	-		PFLU_RS13930	0.29	-1.3
3,133,159	+		PFLU_RS13930	0.32	-0.9
3,133,222	+		PFLU_RS13930	0.39	+0.0
3,133,222	+		PFLU_RS13930	0.39	-0.4
3,133,222	+		PFLU_RS13930	0.39	-0.6
3,133,223	-		PFLU_RS13930	0.40	+1.7
3,133,223	-		PFLU_RS13930	0.40	-0.0
3,133,249	-		PFLU_RS13930	0.43	-1.7
3,133,289	+		PFLU_RS13930	0.47	-0.0
3,133,290	-		PFLU_RS13930	0.47	-0.6
3,133,293	-		PFLU_RS13930	0.48	+0.2
3,133,293	-		PFLU_RS13930	0.48	-1.4
3,133,297	+		PFLU_RS13930	0.48	+0.7
3,133,298	-		PFLU_RS13930	0.48	+2.5
3,133,322	-		PFLU_RS13930	0.51	+1.5
3,133,366	+		PFLU_RS13930	0.56	+0.2
3,133,367	-		PFLU_RS13930	0.56	+0.2
3,133,367	-		PFLU_RS13930	0.56	+2.0
3,133,398	-		PFLU_RS13930	0.60	-1.7
3,133,519	-		PFLU_RS13930	0.74	-1.6
3,133,519	-		PFLU_RS13930	0.74	-0.0
3,133,519	-		PFLU_RS13930	0.74	+0.4
3,133,548	+		PFLU_RS13930	0.78	+0.6
3,133,548	+		PFLU_RS13930	0.78	-0.9
3,133,548	+		PFLU_RS13930	0.78	+0.6
3,133,549	-		PFLU_RS13930	0.78	-0.6
3,133,549	-		PFLU_RS13930	0.78	-0.6
3,133,549	-		PFLU_RS13930	0.78	-0.6
3,133,549	-		PFLU_RS13930	0.78	+1.5
3,133,551	+		PFLU_RS13930	0.78	-2.2
3,133,552	-		PFLU_RS13930	0.78	-0.6
3,133,552	-		PFLU_RS13930	0.78	+3.0
3,133,595	+		PFLU_RS13930	0.83	-1.7
3,133,595	+		PFLU_RS13930	0.83	-0.8
3,133,595	+		PFLU_RS13930	0.83	-0.0
3,133,595	+		PFLU_RS13930	0.83	+0.5
3,133,595	+		PFLU_RS13930	0.83	+0.4
3,133,595	+		PFLU_RS13930	0.83	-0.8
3,133,595	+		PFLU_RS13930	0.83	+0.2
3,133,595	+		PFLU_RS13930	0.83	+1.0
3,133,596	-		PFLU_RS13930	0.83	-0.9
3,133,596	-		PFLU_RS13930	0.83	-0.4
3,133,596	-		PFLU_RS13930	0.83	-0.4
3,133,600	+		PFLU_RS13930	0.84	-0.8
3,133,601	-		PFLU_RS13930	0.84	-1.9
3,133,601	-		PFLU_RS13930	0.84	+1.0
3,133,603	+		PFLU_RS13930	0.84	-1.4
3,133,603	+		PFLU_RS13930	0.84	-0.7
3,133,604	-		PFLU_RS13930	0.84	+1.0
3,133,604	-		PFLU_RS13930	0.84	+1.4
3,133,637	+		PFLU_RS13930	0.88	-0.9
3,133,637	+		PFLU_RS13930	0.88	-0.0
3,133,638	-		PFLU_RS13930	0.88	-0.0
3,133,737	+				+0.3
3,133,737	+				-0.0
3,133,791	+				-0.4
3,133,797	-				+1.5
3,133,797	-				+0.9
3,133,797	-				+0.2
3,134,044	+				+0.7
3,134,044	+				+0.5
3,134,062	+				-0.2
3,134,063	-				-1.2
3,134,063	-				-0.2
3,134,127	-		PFLU_RS13940	0.21	+0.2
3,134,169	+		PFLU_RS13940	0.34	+2.2
3,134,180	+		PFLU_RS13940	0.37	+1.7
3,134,200	+		PFLU_RS13940	0.43	-2.5
3,134,200	+		PFLU_RS13940	0.43	+0.9
3,134,200	+		PFLU_RS13940	0.43	-0.1
3,134,200	+		PFLU_RS13940	0.43	-1.3
3,134,200	+		PFLU_RS13940	0.43	-0.1
3,134,200	+		PFLU_RS13940	0.43	+0.9
3,134,200	+		PFLU_RS13940	0.43	-0.6
3,134,200	+		PFLU_RS13940	0.43	+0.1
3,134,200	+		PFLU_RS13940	0.43	-0.9
3,134,201	-		PFLU_RS13940	0.43	-0.6
3,134,201	-		PFLU_RS13940	0.43	+2.5
3,134,201	-		PFLU_RS13940	0.43	-1.1
3,134,201	-		PFLU_RS13940	0.43	-0.2
3,134,201	-		PFLU_RS13940	0.43	-0.3
3,134,201	-		PFLU_RS13940	0.43	-0.1
3,134,235	-		PFLU_RS13940	0.54	-0.8
3,134,245	+		PFLU_RS13940	0.57	-0.1
3,134,259	-		PFLU_RS13940	0.61	-0.6
3,134,259	-		PFLU_RS13940	0.61	-0.9
3,134,309	-		PFLU_RS13940	0.76	-1.1
3,134,309	-		PFLU_RS13940	0.76	+0.9
3,134,309	-		PFLU_RS13940	0.76	+2.2
3,134,310	+		PFLU_RS13940	0.76	-1.4
3,134,310	+		PFLU_RS13940	0.76	-0.5
3,134,310	+		PFLU_RS13940	0.76	-0.1
3,134,310	+		PFLU_RS13940	0.76	-0.1
3,134,310	+		PFLU_RS13940	0.76	+1.5
3,134,310	+		PFLU_RS13940	0.76	+0.9
3,134,310	+		PFLU_RS13940	0.76	+2.0
3,134,310	+		PFLU_RS13940	0.76	-0.2
3,134,310	+		PFLU_RS13940	0.76	+0.4
3,134,310	+		PFLU_RS13940	0.76	+0.8
3,134,310	+		PFLU_RS13940	0.76	-0.4
3,134,310	+		PFLU_RS13940	0.76	+0.6
3,134,310	+		PFLU_RS13940	0.76	-0.3
3,134,310	+		PFLU_RS13940	0.76	+0.4
3,134,310	+		PFLU_RS13940	0.76	-0.3
3,134,310	+		PFLU_RS13940	0.76	-1.1
3,134,310	+		PFLU_RS13940	0.76	-3.0
3,134,310	+		PFLU_RS13940	0.76	+1.3
3,134,311	-		PFLU_RS13940	0.76	+0.4
3,134,311	-		PFLU_RS13940	0.76	+0.4
3,134,311	-		PFLU_RS13940	0.76	-0.6
3,134,311	-		PFLU_RS13940	0.76	-0.1
3,134,311	-		PFLU_RS13940	0.76	+0.7
3,134,311	-		PFLU_RS13940	0.76	-0.9
3,134,311	-		PFLU_RS13940	0.76	-0.4
3,134,311	-		PFLU_RS13940	0.76	+0.4
3,134,311	-		PFLU_RS13940	0.76	-0.1
3,134,311	-		PFLU_RS13940	0.76	-1.4
3,134,311	-		PFLU_RS13940	0.76	+0.3
3,134,311	-		PFLU_RS13940	0.76	-0.6
3,134,312	+		PFLU_RS13940	0.76	-1.3
3,134,312	+		PFLU_RS13940	0.76	+0.4
3,134,312	+		PFLU_RS13940	0.76	+1.6
3,134,312	+		PFLU_RS13940	0.76	-0.6
3,134,312	+		PFLU_RS13940	0.76	+0.6
3,134,312	+		PFLU_RS13940	0.76	-0.1
3,134,312	+		PFLU_RS13940	0.76	-0.1
3,134,312	+		PFLU_RS13940	0.76	-0.1
3,134,312	+		PFLU_RS13940	0.76	-1.9
3,134,312	+		PFLU_RS13940	0.76	+0.9
3,134,312	+		PFLU_RS13940	0.76	-0.9
3,134,312	+		PFLU_RS13940	0.76	+3.9
3,134,312	+		PFLU_RS13940	0.76	+0.6
3,134,312	+		PFLU_RS13940	0.76	-0.5
3,134,312	+		PFLU_RS13940	0.76	-0.1
3,134,312	+		PFLU_RS13940	0.76	+0.6
3,134,313	-		PFLU_RS13940	0.77	+1.5
3,134,313	-		PFLU_RS13940	0.77	-2.1
3,134,313	-		PFLU_RS13940	0.77	+1.9
3,134,313	-		PFLU_RS13940	0.77	+0.3
3,134,313	-		PFLU_RS13940	0.77	-0.9
3,134,313	-		PFLU_RS13940	0.77	-1.2
3,134,313	-		PFLU_RS13940	0.77	-1.4
3,134,313	-		PFLU_RS13940	0.77	-0.1
3,134,313	-		PFLU_RS13940	0.77	-0.5
3,134,313	-		PFLU_RS13940	0.77	+0.5
3,134,313	-		PFLU_RS13940	0.77	+1.3
3,134,313	-		PFLU_RS13940	0.77	+0.9
3,134,313	-		PFLU_RS13940	0.77	+0.5
3,134,313	-		PFLU_RS13940	0.77	+2.4
3,134,313	-		PFLU_RS13940	0.77	+0.9
3,134,332	-		PFLU_RS13940	0.82	-1.1
3,134,346	+		PFLU_RS13940	0.87	-1.1
3,134,346	+		PFLU_RS13940	0.87	+0.5
3,134,346	+		PFLU_RS13940	0.87	+0.4
3,134,346	+		PFLU_RS13940	0.87	+0.5
3,134,347	-		PFLU_RS13940	0.87	+0.4
3,134,347	-		PFLU_RS13940	0.87	-1.9
3,134,347	-		PFLU_RS13940	0.87	-1.2
3,134,347	-		PFLU_RS13940	0.87	+0.4
3,134,348	+		PFLU_RS13940	0.87	-1.1
3,134,349	-		PFLU_RS13940	0.88	-1.1
3,134,349	-		PFLU_RS13940	0.88	-1.1
3,134,361	+				+0.6
3,134,417	+				-0.5
3,134,417	+				+1.9
3,134,417	+				-0.1
3,134,417	+				-0.1
3,134,418	-				+2.2
3,134,418	-				-0.8
3,134,418	-				-1.9
3,134,418	-				+0.2
3,134,418	-				-0.4
3,134,418	-				-0.7
3,134,418	-				+0.2
3,134,418	-				+0.4
3,134,451	+				-0.8
3,134,464	+				+1.1
3,134,464	+				-1.4
3,134,464	+				+1.2
3,134,465	-				-1.1
3,134,465	-				-0.6
3,134,465	-				+0.9
3,134,465	-				+0.9
3,134,554	+				+0.6
3,134,554	+				+0.6
3,134,554	+				+0.1
3,134,554	+				+0.8
3,134,555	-				-1.1
3,134,555	-				+2.3
3,134,555	-				+1.3
3,134,555	-				+1.2
3,134,555	-				-0.5
3,134,555	-				-0.8
3,134,555	-				-1.4
3,134,560	+				+0.5
3,134,560	+				+0.2
3,134,560	+				+0.9
3,134,560	+				-0.1
3,134,561	-				+0.6
3,134,569	+				+0.3
3,134,570	-				-0.1
3,134,570	-				+0.2
3,134,588	+				+0.1
3,134,588	+				-0.3
3,134,608	+				+0.9
3,134,608	+				+1.2