Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13635

Experiment: Glucose (C) and nitrate (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with MOPS
3,082,515	+		PFLU_RS13630	0.50	+0.4
3,082,515	+		PFLU_RS13630	0.50	-0.2
3,082,515	+		PFLU_RS13630	0.50	-0.6
3,082,515	+		PFLU_RS13630	0.50	-0.3
3,082,516	-		PFLU_RS13630	0.50	+0.5
3,082,516	-		PFLU_RS13630	0.50	-0.0
3,082,664	+		PFLU_RS13630	0.63	+1.6
3,082,665	-		PFLU_RS13630	0.63	-0.0
3,082,665	-		PFLU_RS13630	0.63	-3.1
3,082,759	+		PFLU_RS13630	0.71	+1.7
3,082,760	-		PFLU_RS13630	0.71	+1.0
3,082,780	+		PFLU_RS13630	0.73	-0.6
3,082,780	+		PFLU_RS13630	0.73	+0.7
3,082,780	+		PFLU_RS13630	0.73	-1.3
3,082,780	+		PFLU_RS13630	0.73	+2.8
3,082,781	-		PFLU_RS13630	0.73	-0.8
3,082,781	-		PFLU_RS13630	0.73	-1.6
3,082,862	+		PFLU_RS13630	0.80	+0.7
3,082,862	+		PFLU_RS13630	0.80	+2.0
3,082,862	+		PFLU_RS13630	0.80	-0.4
3,082,862	+		PFLU_RS13630	0.80	-0.6
3,082,863	-		PFLU_RS13630	0.80	+1.6
3,082,863	-		PFLU_RS13630	0.80	-0.7
3,082,863	-		PFLU_RS13630	0.80	-0.0
3,082,920	-		PFLU_RS13630	0.85	+0.7
3,083,134	+				+0.6
3,083,134	+				+0.2
3,083,134	+				+0.2
3,083,135	-				+0.5
3,083,143	+				+1.2
3,083,173	+				-1.6
3,083,174	-				+1.3
3,083,174	-				-3.4
3,083,174	-				+0.9
3,083,174	-				-1.0
3,083,309	+				-1.1
3,083,309	+				-0.0
3,083,309	+				-0.1
3,083,309	+				-0.9
3,083,309	+				-0.4
3,083,309	+				-0.2
3,083,309	+				+2.0
3,083,309	+				-2.2
3,083,309	+				+0.3
3,083,309	+				+0.6
3,083,309	+				-2.4
3,083,309	+				+0.5
3,083,309	+				-0.0
3,083,309	+				+0.7
3,083,309	+				+1.7
3,083,309	+				+1.2
3,083,309	+				-0.7
3,083,309	+				+0.6
3,083,309	+				+0.4
3,083,309	+				+1.1
3,083,309	+				-0.2
3,083,309	+				+0.3
3,083,318	+				-1.7
3,083,326	-				+1.0
3,083,327	+				+0.1
3,083,327	+				-0.4
3,083,327	+				-0.3
3,083,327	+				-1.3
3,083,327	+				-0.0
3,083,327	+				-0.2
3,083,327	+				-1.5
3,083,328	-				-0.3
3,083,328	-				+0.2
3,083,328	-				-0.7
3,083,328	-				+0.7
3,083,328	-				-0.4
3,083,328	-				-0.9
3,083,328	-				+4.5
3,083,425	+				+0.2
3,083,425	+				-1.2
3,083,426	-				-0.6
3,083,426	-				-0.4
3,083,444	+				+1.2
3,083,444	+				+1.7
3,083,444	+				+0.7
3,083,445	-				+0.7
3,083,445	-				-0.6
3,083,521	+				-2.7
3,083,521	+				-0.7
3,083,522	-				-0.2
3,083,522	-				-2.7
3,083,522	-				+1.6
3,083,736	+		PFLU_RS13635	0.22	-1.6
3,083,736	+		PFLU_RS13635	0.22	-0.9
3,083,736	+		PFLU_RS13635	0.22	-0.0
3,083,736	+		PFLU_RS13635	0.22	-0.6
3,083,736	+		PFLU_RS13635	0.22	-1.7
3,083,736	+		PFLU_RS13635	0.22	+0.7
3,083,736	+		PFLU_RS13635	0.22	+0.3
3,083,737	-		PFLU_RS13635	0.22	-1.2
3,083,737	-		PFLU_RS13635	0.22	-0.3
3,083,737	-		PFLU_RS13635	0.22	-1.3
3,083,743	-		PFLU_RS13635	0.23	+0.7
3,083,743	-		PFLU_RS13635	0.23	-0.8
3,083,743	-		PFLU_RS13635	0.23	-0.6
3,083,954	+		PFLU_RS13635	0.39	-0.5
3,083,954	+		PFLU_RS13635	0.39	+0.2
3,083,955	-		PFLU_RS13635	0.39	-1.2
3,083,955	-		PFLU_RS13635	0.39	+0.4
3,083,955	-		PFLU_RS13635	0.39	+0.7
3,084,122	+		PFLU_RS13635	0.52	+1.8
3,084,122	+		PFLU_RS13635	0.52	+1.0
3,084,122	+		PFLU_RS13635	0.52	+1.3
3,084,122	+		PFLU_RS13635	0.52	+1.3
3,084,122	+		PFLU_RS13635	0.52	-0.6
3,084,123	-		PFLU_RS13635	0.52	-0.5
3,084,123	-		PFLU_RS13635	0.52	-0.5
3,084,123	-		PFLU_RS13635	0.52	+1.3
3,084,123	-		PFLU_RS13635	0.52	+1.0
3,084,123	-		PFLU_RS13635	0.52	+0.8
3,084,123	-		PFLU_RS13635	0.52	-0.4
3,084,123	-		PFLU_RS13635	0.52	-0.3
3,084,123	-		PFLU_RS13635	0.52	-0.4
3,084,163	+		PFLU_RS13635	0.55	+1.0
3,084,164	-		PFLU_RS13635	0.55	-0.0
3,084,164	-		PFLU_RS13635	0.55	+3.3
3,084,344	+		PFLU_RS13635	0.68	-1.0
3,084,344	+		PFLU_RS13635	0.68	-0.3
3,084,345	-		PFLU_RS13635	0.69	+0.5
3,084,345	-		PFLU_RS13635	0.69	-1.3
3,084,348	-		PFLU_RS13635	0.69	+0.1
3,084,348	-		PFLU_RS13635	0.69	-0.0
3,084,348	-		PFLU_RS13635	0.69	+0.3
3,084,404	+		PFLU_RS13635	0.73	-0.4
3,084,404	+		PFLU_RS13635	0.73	+0.1
3,084,404	+		PFLU_RS13635	0.73	+0.5
3,084,404	+		PFLU_RS13635	0.73	+1.1
3,084,404	+		PFLU_RS13635	0.73	+0.1
3,084,405	-		PFLU_RS13635	0.73	-0.6
3,084,405	-		PFLU_RS13635	0.73	-0.3
3,084,405	-		PFLU_RS13635	0.73	+0.7
3,084,405	-		PFLU_RS13635	0.73	-1.4
3,084,405	-		PFLU_RS13635	0.73	-0.3
3,084,536	+		PFLU_RS13635	0.83	-0.6
3,084,536	+		PFLU_RS13635	0.83	+0.2
3,084,536	+		PFLU_RS13635	0.83	-0.0
3,084,537	-		PFLU_RS13635	0.83	+0.5
3,084,537	-		PFLU_RS13635	0.83	+0.4
3,084,641	+				+0.4
3,084,653	+				+0.1
3,084,654	-				-0.1
3,084,698	+				+0.6
3,084,779	+				+1.4
3,084,779	+				+0.1
3,084,779	+				-0.2
3,084,779	+				-1.2
3,084,780	-				+0.3
3,084,788	+				+1.0
3,084,788	+				-0.1
3,084,790	+				+0.1
3,084,791	-				-1.3
3,084,791	-				+0.9
3,084,825	+				+2.3
3,084,825	+				+0.3
3,084,825	+				+0.4
3,084,826	-				+0.1
3,084,826	-				-1.3
3,084,826	-				-0.8
3,084,910	+				+1.7
3,084,911	-				-1.2
3,084,935	+				-0.2
3,084,935	+				-0.0
3,084,935	+				+0.1
3,084,936	-				+0.4
3,084,936	-				-0.9
3,084,936	-				-1.7
3,084,936	-				-0.4
3,084,986	+				+0.4
3,084,986	+				+1.3
3,084,987	-				+0.3
3,084,987	-				-0.0
3,084,987	-				-0.3
3,084,987	-				+0.9
3,085,203	-		PFLU_RS13640	0.42	-1.7
3,085,441	+		PFLU_RS13640	0.80	-0.0
3,085,463	+		PFLU_RS13640	0.84	-0.0
3,085,463	+		PFLU_RS13640	0.84	-2.5
3,085,463	+		PFLU_RS13640	0.84	-0.6
3,085,463	+		PFLU_RS13640	0.84	+0.1
3,085,464	-		PFLU_RS13640	0.84	+0.2
3,085,539	-				+3.6
3,085,539	-				-0.5
3,085,587	+				+1.6
3,085,587	+				+0.3
3,085,587	+				+1.3
3,085,587	+				-1.6
3,085,587	+				+1.1
3,085,587	+				+1.0
3,085,587	+				+0.6
3,085,587	+				-0.4
3,085,588	-				+1.0
3,085,588	-				-0.0
3,085,588	-				-0.2
3,085,588	-				+1.4
3,085,588	-				-0.1
3,085,588	-				-0.4
3,085,588	-				+0.6
3,085,605	+				+0.7
3,085,605	+				+0.1
3,085,605	+				-1.2
3,085,606	-				-0.7
3,085,719	+				+0.2
3,085,719	+				-0.4
3,085,754	+				+0.0
3,085,754	+				+0.6
3,085,755	-				+2.1