Experiment: MoYLS4 with Ammonium Persulfate 2.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0408 and DVU0409 are separated by 222 nucleotides DVU0409 and DVU0410 are separated by 5 nucleotides DVU0410 and DVU0411 are separated by 161 nucleotides
DVU0408: DVU0408 - response regulator/sensory box/GGDEF domain/EAL domain protein (TIGR), at 456,505 to 458,652
DVU0408
DVU0409: DVU0409 - hypothetical protein (TIGR), at 458,875 to 459,225
DVU0409
DVU0410: DVU0410 - hypothetical protein (TIGR), at 459,231 to 459,836
DVU0410
DVU0411: DVU0411 - heptosyltransferase family protein (TIGR), at 459,998 to 461,671
DVU0411
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 457.934 kb on - strand, within DVU0408 at 457.962 kb on + strand, within DVU0408 at 457.962 kb on + strand, within DVU0408 at 457.970 kb on - strand, within DVU0408 at 458.196 kb on + strand, within DVU0408 at 458.237 kb on + strand, within DVU0408 at 458.252 kb on + strand, within DVU0408 at 458.316 kb on + strand, within DVU0408 at 458.381 kb on + strand, within DVU0408 at 458.383 kb on + strand, within DVU0408 at 458.441 kb on - strand at 458.567 kb on + strand at 458.575 kb on - strand at 458.713 kb on + strand at 458.779 kb on - strand at 458.792 kb on + strand at 458.792 kb on + strand at 458.839 kb on + strand at 458.886 kb on + strand at 458.894 kb on - strand at 458.906 kb on + strand at 458.914 kb on - strand, within DVU0409 at 458.994 kb on - strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.177 kb on + strand, within DVU0409 at 459.202 kb on - strand at 459.448 kb on + strand, within DVU0410 at 459.448 kb on + strand, within DVU0410 at 459.482 kb on - strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.500 kb on + strand, within DVU0410 at 459.562 kb on + strand, within DVU0410 at 459.577 kb on + strand, within DVU0410 at 459.580 kb on - strand, within DVU0410 at 459.585 kb on - strand, within DVU0410 at 459.658 kb on + strand, within DVU0410 at 459.665 kb on - strand, within DVU0410 at 459.685 kb on - strand, within DVU0410 at 459.688 kb on + strand, within DVU0410 at 459.727 kb on - strand, within DVU0410 at 459.737 kb on + strand, within DVU0410 at 459.934 kb on + strand at 460.029 kb on - strand at 460.118 kb on - strand at 460.133 kb on + strand at 460.136 kb on - strand at 460.154 kb on - strand at 460.176 kb on - strand, within DVU0411
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ammonium Persulfate 2.5mM remove 457,934 - DVU0408 0.67 +0.6 457,962 + DVU0408 0.68 -1.5 457,962 + DVU0408 0.68 -0.0 457,970 - DVU0408 0.68 -0.7 458,196 + DVU0408 0.79 -0.2 458,237 + DVU0408 0.81 -1.5 458,252 + DVU0408 0.81 -0.7 458,316 + DVU0408 0.84 -0.1 458,381 + DVU0408 0.87 +0.6 458,383 + DVU0408 0.87 -0.4 458,441 - +1.6 458,567 + +0.2 458,575 - -1.2 458,713 + +1.0 458,779 - +0.1 458,792 + +0.0 458,792 + -0.9 458,839 + +0.0 458,886 + -0.6 458,894 - -0.1 458,906 + -0.6 458,914 - DVU0409 0.11 -1.2 458,994 - DVU0409 0.34 -0.4 459,177 + DVU0409 0.86 -0.9 459,177 + DVU0409 0.86 -1.1 459,202 - -0.3 459,448 + DVU0410 0.36 -1.0 459,448 + DVU0410 0.36 +0.1 459,482 - DVU0410 0.41 +0.1 459,500 + DVU0410 0.44 -0.2 459,500 + DVU0410 0.44 -0.0 459,500 + DVU0410 0.44 -0.1 459,562 + DVU0410 0.55 -0.4 459,577 + DVU0410 0.57 -2.8 459,580 - DVU0410 0.58 -0.2 459,585 - DVU0410 0.58 +0.0 459,658 + DVU0410 0.70 -0.6 459,665 - DVU0410 0.72 -0.9 459,685 - DVU0410 0.75 -0.3 459,688 + DVU0410 0.75 -0.7 459,727 - DVU0410 0.82 -0.2 459,737 + DVU0410 0.83 -0.3 459,934 + -0.2 460,029 - -0.5 460,118 - +1.3 460,133 + -2.0 460,136 - +0.3 460,154 - -0.6 460,176 - DVU0411 0.11 +0.6
Or see this region's nucleotide sequence