Experiment: MoYLS4 with Ammonium Persulfate 2.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oppF and oppD are separated by 10 nucleotides oppD and oppC are separated by 2 nucleotides oppC and DVU0168 are separated by 1 nucleotides
DVU0165: oppF - oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR), at 205,350 to 206,363
oppF
DVU0166: oppD - oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR), at 206,374 to 207,360
oppD
DVU0167: oppC - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 207,363 to 208,283
oppC
DVU0168: DVU0168 - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 208,285 to 209,262
DVU0168
Position (kb) 206
207
208 Strain fitness (log2 ratio) -2
-1
0
1 at 205.401 kb on - strand at 205.411 kb on + strand at 205.558 kb on - strand, within oppF at 205.601 kb on + strand, within oppF at 205.601 kb on + strand, within oppF at 205.626 kb on + strand, within oppF at 205.656 kb on + strand, within oppF at 205.718 kb on + strand, within oppF at 205.718 kb on + strand, within oppF at 205.774 kb on - strand, within oppF at 205.780 kb on - strand, within oppF at 205.852 kb on - strand, within oppF at 205.852 kb on - strand, within oppF at 205.867 kb on + strand, within oppF at 205.891 kb on + strand, within oppF at 205.891 kb on + strand, within oppF at 205.937 kb on - strand, within oppF at 206.020 kb on + strand, within oppF at 206.085 kb on - strand, within oppF at 206.165 kb on + strand, within oppF at 206.281 kb on + strand at 206.402 kb on - strand at 206.425 kb on - strand at 206.446 kb on - strand at 206.450 kb on + strand at 206.498 kb on + strand, within oppD at 206.498 kb on + strand, within oppD at 206.553 kb on - strand, within oppD at 206.560 kb on + strand, within oppD at 206.560 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.617 kb on - strand, within oppD at 206.630 kb on + strand, within oppD at 206.638 kb on - strand, within oppD at 206.653 kb on + strand, within oppD at 206.653 kb on - strand, within oppD at 206.741 kb on - strand, within oppD at 206.742 kb on - strand, within oppD at 206.761 kb on - strand, within oppD at 206.811 kb on - strand, within oppD at 206.846 kb on + strand, within oppD at 206.851 kb on + strand, within oppD at 206.856 kb on + strand, within oppD at 206.856 kb on - strand, within oppD at 206.864 kb on - strand, within oppD at 206.907 kb on - strand, within oppD at 206.913 kb on + strand, within oppD at 206.930 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.946 kb on - strand, within oppD at 206.993 kb on + strand, within oppD at 207.156 kb on - strand, within oppD at 207.156 kb on - strand, within oppD at 207.192 kb on + strand, within oppD at 207.228 kb on + strand, within oppD at 207.377 kb on + strand at 207.416 kb on + strand at 207.424 kb on - strand at 207.424 kb on - strand at 207.502 kb on + strand, within oppC at 207.719 kb on + strand, within oppC at 207.745 kb on + strand, within oppC at 208.020 kb on - strand, within oppC at 208.186 kb on + strand, within oppC at 208.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Ammonium Persulfate 2.5mM remove 205,401 - -0.1 205,411 + -1.6 205,558 - oppF DVU0165 0.21 -0.1 205,601 + oppF DVU0165 0.25 +0.3 205,601 + oppF DVU0165 0.25 -0.1 205,626 + oppF DVU0165 0.27 -0.2 205,656 + oppF DVU0165 0.30 -0.7 205,718 + oppF DVU0165 0.36 -2.7 205,718 + oppF DVU0165 0.36 -2.5 205,774 - oppF DVU0165 0.42 -1.8 205,780 - oppF DVU0165 0.42 -0.0 205,852 - oppF DVU0165 0.50 -0.7 205,852 - oppF DVU0165 0.50 -0.3 205,867 + oppF DVU0165 0.51 -0.9 205,891 + oppF DVU0165 0.53 -0.1 205,891 + oppF DVU0165 0.53 -0.8 205,937 - oppF DVU0165 0.58 -1.9 206,020 + oppF DVU0165 0.66 -0.3 206,085 - oppF DVU0165 0.72 +1.4 206,165 + oppF DVU0165 0.80 +1.6 206,281 + +0.9 206,402 - -1.1 206,425 - -1.8 206,446 - -1.3 206,450 + -0.9 206,498 + oppD DVU0166 0.13 -0.0 206,498 + oppD DVU0166 0.13 -0.7 206,553 - oppD DVU0166 0.18 -0.0 206,560 + oppD DVU0166 0.19 -1.1 206,560 + oppD DVU0166 0.19 -0.0 206,609 + oppD DVU0166 0.24 -0.8 206,609 + oppD DVU0166 0.24 -1.5 206,609 + oppD DVU0166 0.24 -0.6 206,609 + oppD DVU0166 0.24 -0.3 206,617 - oppD DVU0166 0.25 -0.4 206,630 + oppD DVU0166 0.26 -1.7 206,638 - oppD DVU0166 0.27 -0.2 206,653 + oppD DVU0166 0.28 -1.7 206,653 - oppD DVU0166 0.28 -2.0 206,741 - oppD DVU0166 0.37 -0.5 206,742 - oppD DVU0166 0.37 -1.2 206,761 - oppD DVU0166 0.39 -0.9 206,811 - oppD DVU0166 0.44 -1.0 206,846 + oppD DVU0166 0.48 -1.1 206,851 + oppD DVU0166 0.48 -0.8 206,856 + oppD DVU0166 0.49 -0.1 206,856 - oppD DVU0166 0.49 -1.8 206,864 - oppD DVU0166 0.50 -0.4 206,907 - oppD DVU0166 0.54 -1.0 206,913 + oppD DVU0166 0.55 -0.6 206,930 + oppD DVU0166 0.56 -1.0 206,938 + oppD DVU0166 0.57 +0.0 206,938 + oppD DVU0166 0.57 -2.0 206,938 + oppD DVU0166 0.57 +0.6 206,938 + oppD DVU0166 0.57 -0.9 206,946 - oppD DVU0166 0.58 -0.7 206,993 + oppD DVU0166 0.63 -0.6 207,156 - oppD DVU0166 0.79 -0.4 207,156 - oppD DVU0166 0.79 -0.2 207,192 + oppD DVU0166 0.83 -0.7 207,228 + oppD DVU0166 0.87 -0.2 207,377 + -0.9 207,416 + -1.5 207,424 - -0.0 207,424 - -0.0 207,502 + oppC DVU0167 0.15 -1.1 207,719 + oppC DVU0167 0.39 -0.7 207,745 + oppC DVU0167 0.41 -0.8 208,020 - oppC DVU0167 0.71 -1.2 208,186 + oppC DVU0167 0.89 -0.6 208,272 - -0.5
Or see this region's nucleotide sequence