Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1402

Experiment: MoYLS4 with Ammonium Persulfate 2.5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1401 and DVU1402 are separated by 152 nucleotidesDVU1402 and cobO are separated by 4 nucleotidescobO and pflA overlap by 23 nucleotides DVU1401: DVU1401 - membrane protein, putative (TIGR), at 1,470,407 to 1,471,372 DVU1401 DVU1402: DVU1402 - transcriptional regulator, LysR family (TIGR), at 1,471,525 to 1,472,520 DVU1402 DVU1403: cobO - cob(I)alamin adenosyltransferase (TIGR), at 1,472,525 to 1,473,028 cobO DVU1404: pflA - radical SAM domain protein (TIGR), at 1,473,006 to 1,474,112 pflA Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -3 -2 -1 0 1at 1470.583 kb on + strand, within DVU1401at 1470.591 kb on - strand, within DVU1401at 1470.662 kb on - strand, within DVU1401at 1470.759 kb on - strand, within DVU1401at 1470.782 kb on - strand, within DVU1401at 1470.784 kb on - strand, within DVU1401at 1470.790 kb on - strand, within DVU1401at 1470.840 kb on + strand, within DVU1401at 1471.033 kb on + strand, within DVU1401at 1471.314 kb on + strandat 1471.334 kb on + strandat 1471.468 kb on + strandat 1471.468 kb on + strandat 1471.678 kb on - strand, within DVU1402at 1471.680 kb on + strand, within DVU1402at 1471.707 kb on - strand, within DVU1402at 1471.745 kb on - strand, within DVU1402at 1471.750 kb on - strand, within DVU1402at 1471.759 kb on - strand, within DVU1402at 1471.907 kb on + strand, within DVU1402at 1471.910 kb on - strand, within DVU1402at 1471.948 kb on - strand, within DVU1402at 1472.056 kb on + strand, within DVU1402at 1472.074 kb on - strand, within DVU1402at 1472.111 kb on + strand, within DVU1402at 1472.119 kb on - strand, within DVU1402at 1472.163 kb on + strand, within DVU1402at 1472.187 kb on - strand, within DVU1402at 1472.233 kb on + strand, within DVU1402at 1472.257 kb on + strand, within DVU1402at 1472.257 kb on + strand, within DVU1402at 1472.257 kb on + strand, within DVU1402at 1472.309 kb on - strand, within DVU1402at 1472.343 kb on + strand, within DVU1402at 1472.664 kb on + strand, within cobOat 1472.767 kb on - strand, within cobOat 1472.787 kb on + strand, within cobOat 1472.830 kb on - strand, within cobOat 1472.830 kb on - strand, within cobOat 1472.835 kb on - strand, within cobOat 1472.913 kb on - strand, within cobOat 1472.969 kb on + strand, within cobOat 1472.974 kb on + strand, within cobOat 1472.976 kb on - strand, within cobOat 1472.977 kb on - strand, within cobOat 1472.990 kb on + strandat 1472.990 kb on + strandat 1472.998 kb on - strandat 1473.036 kb on - strandat 1473.047 kb on + strandat 1473.087 kb on - strandat 1473.099 kb on + strandat 1473.175 kb on - strand, within pflAat 1473.175 kb on - strand, within pflAat 1473.212 kb on + strand, within pflAat 1473.258 kb on - strand, within pflAat 1473.260 kb on - strand, within pflAat 1473.281 kb on + strand, within pflAat 1473.289 kb on - strand, within pflAat 1473.300 kb on - strand, within pflAat 1473.318 kb on + strand, within pflAat 1473.328 kb on - strand, within pflAat 1473.455 kb on + strand, within pflAat 1473.475 kb on - strand, within pflAat 1473.489 kb on + strand, within pflA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ammonium Persulfate 2.5mM
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1,470,583 + DVU1401 0.18 -0.8
1,470,591 - DVU1401 0.19 -1.8
1,470,662 - DVU1401 0.26 -1.6
1,470,759 - DVU1401 0.36 +0.1
1,470,782 - DVU1401 0.39 -1.2
1,470,784 - DVU1401 0.39 -1.2
1,470,790 - DVU1401 0.40 -2.2
1,470,840 + DVU1401 0.45 -2.8
1,471,033 + DVU1401 0.65 -1.4
1,471,314 + -1.5
1,471,334 + -2.2
1,471,468 + -1.4
1,471,468 + -1.8
1,471,678 - DVU1402 0.15 -1.2
1,471,680 + DVU1402 0.16 -1.3
1,471,707 - DVU1402 0.18 -0.9
1,471,745 - DVU1402 0.22 -1.3
1,471,750 - DVU1402 0.23 -1.8
1,471,759 - DVU1402 0.23 -1.2
1,471,907 + DVU1402 0.38 +0.1
1,471,910 - DVU1402 0.39 -1.4
1,471,948 - DVU1402 0.42 -2.3
1,472,056 + DVU1402 0.53 -2.0
1,472,074 - DVU1402 0.55 -1.2
1,472,111 + DVU1402 0.59 -1.1
1,472,119 - DVU1402 0.60 -0.6
1,472,163 + DVU1402 0.64 -2.0
1,472,187 - DVU1402 0.66 -1.8
1,472,233 + DVU1402 0.71 -0.3
1,472,257 + DVU1402 0.73 -1.7
1,472,257 + DVU1402 0.73 -1.7
1,472,257 + DVU1402 0.73 -2.2
1,472,309 - DVU1402 0.79 -0.5
1,472,343 + DVU1402 0.82 -1.1
1,472,664 + cobO DVU1403 0.28 -1.0
1,472,767 - cobO DVU1403 0.48 +0.0
1,472,787 + cobO DVU1403 0.52 +0.2
1,472,830 - cobO DVU1403 0.61 -0.0
1,472,830 - cobO DVU1403 0.61 -1.9
1,472,835 - cobO DVU1403 0.62 +1.1
1,472,913 - cobO DVU1403 0.77 -1.9
1,472,969 + cobO DVU1403 0.88 +0.4
1,472,974 + cobO DVU1403 0.89 -0.5
1,472,976 - cobO DVU1403 0.89 -0.3
1,472,977 - cobO DVU1403 0.90 -0.0
1,472,990 + +1.2
1,472,990 + -1.3
1,472,998 - -0.5
1,473,036 - -0.7
1,473,047 + +0.1
1,473,087 - -0.1
1,473,099 + +0.4
1,473,175 - pflA DVU1404 0.15 -0.8
1,473,175 - pflA DVU1404 0.15 -0.0
1,473,212 + pflA DVU1404 0.19 -0.4
1,473,258 - pflA DVU1404 0.23 +0.0
1,473,260 - pflA DVU1404 0.23 -1.5
1,473,281 + pflA DVU1404 0.25 -0.3
1,473,289 - pflA DVU1404 0.26 -0.1
1,473,300 - pflA DVU1404 0.27 -0.2
1,473,318 + pflA DVU1404 0.28 -1.3
1,473,328 - pflA DVU1404 0.29 -0.0
1,473,455 + pflA DVU1404 0.41 -1.4
1,473,475 - pflA DVU1404 0.42 -0.4
1,473,489 + pflA DVU1404 0.44 -0.2

Or see this region's nucleotide sequence