Strain Fitness in Sinorhizobium meliloti 1021 around SMc02189

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02189 and SMc02200 are separated by 1 nucleotidesSMc02200 and SMc02184 are separated by 136 nucleotides SMc02189: SMc02189 - hypothetical protein, at 545,715 to 545,969 SMc02189 SMc02200: SMc02200 - hypothetical protein, at 545,971 to 546,495 SMc02200 SMc02184: SMc02184 - transcriptional regulator, at 546,632 to 546,901 SMc02184 Position (kb) 545 546Strain fitness (log2 ratio) -2 -1 0 1 2at 544.741 kb on + strandat 544.826 kb on + strandat 544.826 kb on + strandat 544.827 kb on - strandat 544.827 kb on - strandat 544.893 kb on + strandat 544.893 kb on + strandat 544.894 kb on - strandat 544.894 kb on - strandat 544.894 kb on - strandat 544.925 kb on + strandat 544.926 kb on - strandat 544.926 kb on - strandat 544.991 kb on - strandat 544.993 kb on + strandat 544.993 kb on + strandat 544.994 kb on - strandat 544.994 kb on - strandat 545.118 kb on - strandat 545.273 kb on - strandat 545.273 kb on - strandat 545.284 kb on + strandat 545.285 kb on - strandat 545.288 kb on + strandat 545.289 kb on - strandat 545.289 kb on - strandat 545.361 kb on + strandat 545.397 kb on + strandat 545.397 kb on + strandat 545.397 kb on + strandat 545.398 kb on - strandat 545.430 kb on - strandat 545.434 kb on + strandat 545.438 kb on + strandat 545.439 kb on - strandat 545.443 kb on + strandat 545.443 kb on + strandat 545.443 kb on + strandat 545.755 kb on + strand, within SMc02189at 545.796 kb on - strand, within SMc02189at 545.915 kb on + strand, within SMc02189at 545.916 kb on - strand, within SMc02189at 545.916 kb on - strand, within SMc02189at 545.916 kb on - strand, within SMc02189at 545.916 kb on - strand, within SMc02189at 545.916 kb on - strand, within SMc02189at 545.919 kb on + strand, within SMc02189at 545.920 kb on - strand, within SMc02189at 545.933 kb on + strand, within SMc02189at 545.934 kb on - strand, within SMc02189at 545.934 kb on - strand, within SMc02189at 545.951 kb on - strandat 546.070 kb on + strand, within SMc02200at 546.070 kb on + strand, within SMc02200at 546.095 kb on - strand, within SMc02200at 546.095 kb on - strand, within SMc02200at 546.135 kb on - strand, within SMc02200at 546.171 kb on - strand, within SMc02200at 546.171 kb on - strand, within SMc02200at 546.171 kb on - strand, within SMc02200at 546.171 kb on - strand, within SMc02200at 546.175 kb on - strand, within SMc02200at 546.201 kb on + strand, within SMc02200at 546.326 kb on + strand, within SMc02200at 546.333 kb on + strand, within SMc02200at 546.333 kb on + strand, within SMc02200at 546.398 kb on - strand, within SMc02200at 546.398 kb on - strand, within SMc02200at 546.400 kb on + strand, within SMc02200at 546.469 kb on + strandat 546.469 kb on + strandat 546.556 kb on + strandat 546.557 kb on - strandat 546.557 kb on - strandat 546.562 kb on - strandat 546.615 kb on + strandat 546.616 kb on - strandat 546.690 kb on + strand, within SMc02184at 546.691 kb on - strand, within SMc02184at 546.735 kb on - strand, within SMc02184at 546.783 kb on + strand, within SMc02184at 546.783 kb on + strand, within SMc02184at 546.784 kb on - strand, within SMc02184at 546.784 kb on - strand, within SMc02184at 546.784 kb on - strand, within SMc02184at 546.895 kb on + strandat 546.895 kb on + strandat 546.895 kb on + strandat 546.895 kb on + strandat 546.895 kb on + strandat 546.896 kb on - strandat 546.896 kb on - strandat 546.896 kb on - strandat 546.899 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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544,741 + -0.3
544,826 + +0.6
544,826 + -0.5
544,827 - -0.2
544,827 - -0.2
544,893 + +0.3
544,893 + +0.2
544,894 - -0.5
544,894 - -0.3
544,894 - -1.1
544,925 + -0.2
544,926 - +0.1
544,926 - -0.4
544,991 - -0.3
544,993 + -0.9
544,993 + -0.9
544,994 - -0.1
544,994 - +0.1
545,118 - -0.7
545,273 - -0.3
545,273 - +0.6
545,284 + -0.0
545,285 - -1.0
545,288 + +0.3
545,289 - -0.4
545,289 - +1.5
545,361 + -0.3
545,397 + +0.7
545,397 + -0.5
545,397 + +0.6
545,398 - +0.0
545,430 - +0.8
545,434 + -0.2
545,438 + -0.2
545,439 - +0.7
545,443 + -0.3
545,443 + -0.6
545,443 + +0.0
545,755 + SMc02189 0.16 +0.3
545,796 - SMc02189 0.32 -0.3
545,915 + SMc02189 0.78 +0.2
545,916 - SMc02189 0.79 -0.5
545,916 - SMc02189 0.79 -2.3
545,916 - SMc02189 0.79 -0.6
545,916 - SMc02189 0.79 -0.4
545,916 - SMc02189 0.79 -0.6
545,919 + SMc02189 0.80 +0.3
545,920 - SMc02189 0.80 +1.5
545,933 + SMc02189 0.85 -1.0
545,934 - SMc02189 0.86 -0.7
545,934 - SMc02189 0.86 +0.3
545,951 - +0.6
546,070 + SMc02200 0.19 +0.3
546,070 + SMc02200 0.19 +2.0
546,095 - SMc02200 0.24 -1.1
546,095 - SMc02200 0.24 +0.4
546,135 - SMc02200 0.31 +0.7
546,171 - SMc02200 0.38 +0.1
546,171 - SMc02200 0.38 +0.1
546,171 - SMc02200 0.38 -1.1
546,171 - SMc02200 0.38 +1.0
546,175 - SMc02200 0.39 -0.6
546,201 + SMc02200 0.44 +0.1
546,326 + SMc02200 0.68 +0.0
546,333 + SMc02200 0.69 +1.0
546,333 + SMc02200 0.69 +0.4
546,398 - SMc02200 0.81 -0.6
546,398 - SMc02200 0.81 -0.3
546,400 + SMc02200 0.82 +1.0
546,469 + +0.8
546,469 + +0.8
546,556 + -0.4
546,557 - -0.2
546,557 - -0.3
546,562 - +0.1
546,615 + -0.7
546,616 - -1.2
546,690 + SMc02184 0.21 -1.8
546,691 - SMc02184 0.22 +0.2
546,735 - SMc02184 0.38 -0.9
546,783 + SMc02184 0.56 -0.5
546,783 + SMc02184 0.56 +0.3
546,784 - SMc02184 0.56 -0.1
546,784 - SMc02184 0.56 -0.1
546,784 - SMc02184 0.56 +0.1
546,895 + +1.8
546,895 + +0.8
546,895 + +0.4
546,895 + +0.9
546,895 + +0.5
546,896 - +1.9
546,896 - -0.5
546,896 - +0.0
546,899 + +0.2

Or see this region's nucleotide sequence