Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02157 and SMc02156 are separated by 150 nucleotides SMc02156 and SMc02187 are separated by 319 nucleotides
SMc02157: SMc02157 - hypothetical protein, at 538,706 to 539,647
SMc02157
SMc02156: SMc02156 - hypothetical protein, at 539,798 to 540,595
SMc02156
SMc02187: SMc02187 - integrase DNA protein, at 540,915 to 542,123
SMc02187
Position (kb) 539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2 at 538.846 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.941 kb on - strand, within SMc02157 at 539.012 kb on + strand, within SMc02157 at 539.013 kb on - strand, within SMc02157 at 539.033 kb on + strand, within SMc02157 at 539.057 kb on + strand, within SMc02157 at 539.088 kb on - strand, within SMc02157 at 539.088 kb on - strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.189 kb on + strand, within SMc02157 at 539.306 kb on + strand, within SMc02157 at 539.306 kb on + strand, within SMc02157 at 539.307 kb on - strand, within SMc02157 at 539.777 kb on - strand at 539.777 kb on - strand at 539.918 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.476 kb on - strand, within SMc02156 at 540.539 kb on + strand at 540.599 kb on + strand at 540.600 kb on - strand at 540.600 kb on - strand at 540.613 kb on + strand at 540.771 kb on - strand at 540.776 kb on - strand at 540.776 kb on - strand at 540.777 kb on + strand at 540.841 kb on + strand at 540.931 kb on - strand at 540.975 kb on + strand at 541.260 kb on - strand, within SMc02187 at 541.317 kb on - strand, within SMc02187 at 541.388 kb on + strand, within SMc02187 at 541.389 kb on - strand, within SMc02187 at 541.389 kb on - strand, within SMc02187 at 541.532 kb on + strand, within SMc02187 at 541.533 kb on - strand, within SMc02187 at 541.564 kb on + strand, within SMc02187 at 541.564 kb on + strand, within SMc02187 at 541.564 kb on + strand, within SMc02187 at 541.569 kb on + strand, within SMc02187 at 541.570 kb on - strand, within SMc02187
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 538,846 + SMc02157 0.15 -0.4 538,940 + SMc02157 0.25 -0.1 538,940 + SMc02157 0.25 +0.6 538,940 + SMc02157 0.25 +2.3 538,941 - SMc02157 0.25 +2.3 539,012 + SMc02157 0.32 -1.2 539,013 - SMc02157 0.33 +0.3 539,033 + SMc02157 0.35 -1.4 539,057 + SMc02157 0.37 +0.0 539,088 - SMc02157 0.41 -0.2 539,088 - SMc02157 0.41 +0.4 539,176 + SMc02157 0.50 -0.1 539,176 + SMc02157 0.50 +0.3 539,176 + SMc02157 0.50 -1.4 539,189 + SMc02157 0.51 -0.2 539,306 + SMc02157 0.64 +2.5 539,306 + SMc02157 0.64 +0.3 539,307 - SMc02157 0.64 +0.2 539,777 - +0.6 539,777 - +0.3 539,918 + SMc02156 0.15 +0.4 540,098 + SMc02156 0.38 +0.2 540,098 + SMc02156 0.38 +0.0 540,098 + SMc02156 0.38 +0.9 540,099 - SMc02156 0.38 +0.4 540,099 - SMc02156 0.38 -1.6 540,132 + SMc02156 0.42 +0.5 540,132 + SMc02156 0.42 +0.2 540,134 + SMc02156 0.42 +2.3 540,134 + SMc02156 0.42 +0.6 540,476 - SMc02156 0.85 -1.7 540,539 + -0.9 540,599 + +1.0 540,600 - +0.2 540,600 - +0.2 540,613 + -0.4 540,771 - -0.0 540,776 - +0.1 540,776 - +0.1 540,777 + -1.9 540,841 + -0.6 540,931 - -0.6 540,975 + -0.0 541,260 - SMc02187 0.29 +1.3 541,317 - SMc02187 0.33 +0.2 541,388 + SMc02187 0.39 -0.5 541,389 - SMc02187 0.39 -0.1 541,389 - SMc02187 0.39 +0.4 541,532 + SMc02187 0.51 -0.5 541,533 - SMc02187 0.51 -0.2 541,564 + SMc02187 0.54 -0.2 541,564 + SMc02187 0.54 -0.3 541,564 + SMc02187 0.54 +0.6 541,569 + SMc02187 0.54 +1.3 541,570 - SMc02187 0.54 +0.6
Or see this region's nucleotide sequence