Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0594 and SMa0599 are separated by 618 nucleotides SMa0599 and SMa0601 are separated by 143 nucleotides
SMa0594: SMa0594 - hypothetical protein, at 316,428 to 317,459
SMa0594
SMa0599: SMa0599 - hypothetical protein, at 318,078 to 319,409
SMa0599
SMa0601: SMa0601 - hypothetical protein, at 319,553 to 321,799
SMa0601
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.541 kb on + strand at 317.541 kb on + strand at 317.542 kb on - strand at 317.546 kb on - strand at 317.546 kb on - strand at 317.546 kb on - strand at 317.621 kb on - strand at 317.649 kb on + strand at 317.650 kb on - strand at 317.650 kb on - strand at 317.653 kb on + strand at 317.661 kb on + strand at 317.689 kb on - strand at 317.724 kb on + strand at 317.793 kb on + strand at 317.793 kb on + strand at 317.797 kb on + strand at 317.797 kb on + strand at 317.798 kb on - strand at 317.798 kb on - strand at 317.959 kb on + strand at 317.960 kb on - strand at 318.196 kb on + strand at 318.196 kb on + strand at 318.196 kb on + strand at 318.197 kb on - strand at 318.197 kb on - strand at 318.446 kb on + strand, within SMa0599 at 318.447 kb on - strand, within SMa0599 at 318.475 kb on + strand, within SMa0599 at 318.475 kb on + strand, within SMa0599 at 318.475 kb on + strand, within SMa0599 at 318.476 kb on - strand, within SMa0599 at 318.564 kb on + strand, within SMa0599 at 318.784 kb on + strand, within SMa0599 at 318.844 kb on + strand, within SMa0599 at 318.844 kb on + strand, within SMa0599 at 318.844 kb on + strand, within SMa0599 at 318.845 kb on - strand, within SMa0599 at 318.850 kb on - strand, within SMa0599 at 318.850 kb on - strand, within SMa0599 at 319.011 kb on - strand, within SMa0599 at 319.147 kb on - strand, within SMa0599 at 319.147 kb on - strand, within SMa0599 at 319.224 kb on - strand, within SMa0599 at 319.412 kb on + strand at 319.413 kb on - strand at 319.413 kb on - strand at 319.438 kb on - strand at 319.476 kb on + strand at 319.476 kb on + strand at 319.548 kb on + strand at 319.548 kb on + strand at 319.549 kb on - strand at 319.779 kb on + strand, within SMa0601 at 319.779 kb on + strand, within SMa0601 at 319.899 kb on + strand, within SMa0601 at 319.899 kb on + strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 319.900 kb on - strand, within SMa0601 at 320.065 kb on - strand, within SMa0601 at 320.065 kb on - strand, within SMa0601 at 320.065 kb on - strand, within SMa0601 at 320.066 kb on - strand, within SMa0601 at 320.337 kb on + strand, within SMa0601 at 320.338 kb on - strand, within SMa0601 at 320.408 kb on - strand, within SMa0601
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 317,541 + -0.1 317,541 + +0.2 317,542 - -0.7 317,546 - -0.3 317,546 - +0.0 317,546 - -0.2 317,621 - -0.3 317,649 + +0.5 317,650 - +0.3 317,650 - -0.8 317,653 + -0.6 317,661 + +0.6 317,689 - +0.0 317,724 + +0.4 317,793 + +0.1 317,793 + -0.1 317,797 + -0.0 317,797 + +2.1 317,798 - -0.4 317,798 - +0.5 317,959 + +0.1 317,960 - -2.4 318,196 + -0.4 318,196 + +0.2 318,196 + +0.1 318,197 - -0.2 318,197 - +0.7 318,446 + SMa0599 0.28 +1.4 318,447 - SMa0599 0.28 +0.1 318,475 + SMa0599 0.30 +0.3 318,475 + SMa0599 0.30 +0.4 318,475 + SMa0599 0.30 +0.3 318,476 - SMa0599 0.30 +0.5 318,564 + SMa0599 0.36 -0.2 318,784 + SMa0599 0.53 +0.5 318,844 + SMa0599 0.58 -0.2 318,844 + SMa0599 0.58 +0.3 318,844 + SMa0599 0.58 -1.2 318,845 - SMa0599 0.58 +0.0 318,850 - SMa0599 0.58 -0.1 318,850 - SMa0599 0.58 -0.6 319,011 - SMa0599 0.70 +1.5 319,147 - SMa0599 0.80 +0.3 319,147 - SMa0599 0.80 +0.2 319,224 - SMa0599 0.86 +0.1 319,412 + -0.7 319,413 - +0.7 319,413 - -2.2 319,438 - -1.3 319,476 + -0.1 319,476 + -0.5 319,548 + -1.2 319,548 + -0.3 319,549 - -1.3 319,779 + SMa0601 0.10 +1.6 319,779 + SMa0601 0.10 +0.0 319,899 + SMa0601 0.15 -0.1 319,899 + SMa0601 0.15 -0.1 319,900 - SMa0601 0.15 -0.5 319,900 - SMa0601 0.15 -1.1 319,900 - SMa0601 0.15 -0.7 319,900 - SMa0601 0.15 -0.7 320,065 - SMa0601 0.23 -1.1 320,065 - SMa0601 0.23 +1.1 320,065 - SMa0601 0.23 -1.3 320,066 - SMa0601 0.23 -0.4 320,337 + SMa0601 0.35 +0.7 320,338 - SMa0601 0.35 -0.4 320,408 - SMa0601 0.38 +1.2
Or see this region's nucleotide sequence