Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21281 and SM_b22012 are separated by 272 nucleotides SM_b22012 and SM_b21283 are separated by 93 nucleotides
SM_b21281: SM_b21281 - xanthine uracil permease, at 855,725 to 857,098
_b21281
SM_b22012: SM_b22012 - hypothetical protein, at 857,371 to 857,778
_b22012
SM_b21283: SM_b21283 - allantoicase, at 857,872 to 858,894
_b21283
Position (kb) 857
858 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 856.709 kb on + strand, within SM_b21281 at 856.709 kb on + strand, within SM_b21281 at 856.710 kb on - strand, within SM_b21281 at 856.829 kb on + strand, within SM_b21281 at 856.853 kb on + strand at 856.853 kb on + strand, within SM_b21281 at 856.853 kb on + strand, within SM_b21281 at 856.854 kb on - strand, within SM_b21281 at 856.989 kb on + strand at 856.989 kb on + strand at 856.994 kb on + strand at 856.995 kb on - strand at 856.995 kb on - strand at 856.995 kb on - strand at 857.201 kb on + strand at 857.201 kb on + strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.202 kb on - strand at 857.268 kb on - strand at 857.596 kb on + strand, within SM_b22012 at 857.658 kb on - strand, within SM_b22012 at 857.674 kb on + strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.675 kb on - strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.676 kb on + strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.677 kb on - strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.733 kb on + strand, within SM_b22012 at 857.825 kb on - strand at 857.825 kb on - strand at 857.829 kb on + strand at 857.993 kb on + strand, within SM_b21283 at 857.994 kb on - strand, within SM_b21283 at 858.255 kb on + strand, within SM_b21283 at 858.297 kb on - strand, within SM_b21283 at 858.456 kb on - strand, within SM_b21283 at 858.456 kb on - strand, within SM_b21283 at 858.594 kb on - strand, within SM_b21283 at 858.669 kb on - strand, within SM_b21283 at 858.770 kb on - strand, within SM_b21283 at 858.774 kb on + strand, within SM_b21283 at 858.774 kb on + strand, within SM_b21283 at 858.775 kb on - strand, within SM_b21283 at 858.775 kb on - strand, within SM_b21283
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 856,709 + SM_b21281 0.72 +0.2 856,709 + SM_b21281 0.72 -1.0 856,710 - SM_b21281 0.72 -0.3 856,829 + SM_b21281 0.80 +1.4 856,853 + -0.3 856,853 + SM_b21281 0.82 -1.8 856,853 + SM_b21281 0.82 -0.1 856,854 - SM_b21281 0.82 -0.2 856,989 + -1.4 856,989 + -0.2 856,994 + +0.1 856,995 - -0.2 856,995 - -0.1 856,995 - -0.1 857,201 + -1.9 857,201 + +0.0 857,202 - +0.9 857,202 - -0.9 857,202 - -0.7 857,202 - -1.4 857,268 - +0.3 857,596 + SM_b22012 0.55 +0.4 857,658 - SM_b22012 0.70 +0.4 857,674 + SM_b22012 0.74 +0.2 857,675 - SM_b22012 0.75 +0.9 857,675 - SM_b22012 0.75 +0.1 857,675 - SM_b22012 0.75 -0.5 857,676 + SM_b22012 0.75 +1.2 857,676 + SM_b22012 0.75 -1.0 857,676 + SM_b22012 0.75 +1.2 857,676 + SM_b22012 0.75 +0.7 857,677 - SM_b22012 0.75 +0.7 857,677 - SM_b22012 0.75 +0.1 857,677 - SM_b22012 0.75 -0.6 857,677 - SM_b22012 0.75 +0.2 857,733 + SM_b22012 0.89 +0.3 857,733 + SM_b22012 0.89 -1.3 857,733 + SM_b22012 0.89 +0.6 857,825 - -0.7 857,825 - -0.4 857,829 + +3.1 857,993 + SM_b21283 0.12 +0.2 857,994 - SM_b21283 0.12 -0.5 858,255 + SM_b21283 0.37 +0.5 858,297 - SM_b21283 0.42 -0.1 858,456 - SM_b21283 0.57 -0.4 858,456 - SM_b21283 0.57 +0.2 858,594 - SM_b21283 0.71 -1.1 858,669 - SM_b21283 0.78 -0.0 858,770 - SM_b21283 0.88 -0.6 858,774 + SM_b21283 0.88 +0.4 858,774 + SM_b21283 0.88 +0.6 858,775 - SM_b21283 0.88 +0.7 858,775 - SM_b21283 0.88 -1.0
Or see this region's nucleotide sequence