Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21373

Experiment: Lactitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21372 and SM_b21373 are separated by 111 nucleotidesSM_b21373 and SM_b21374 are separated by 2 nucleotidesSM_b21374 and SM_b21375 are separated by 23 nucleotides SM_b21372: SM_b21372 - LacI family transcriptional regulator, at 1,036,546 to 1,037,604 _b21372 SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data), at 1,037,716 to 1,038,996 _b21373 SM_b21374: SM_b21374 - tagatose kinase (EC 2.7.1.101) (from data), at 1,038,999 to 1,039,940 _b21374 SM_b21375: SM_b21375 - sugar uptake ABC transporter permease, at 1,039,964 to 1,040,926 _b21375 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1036.716 kb on - strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.925 kb on + strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.926 kb on - strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.982 kb on + strand, within SM_b21372at 1036.983 kb on - strand, within SM_b21372at 1037.033 kb on + strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.034 kb on - strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.141 kb on + strand, within SM_b21372at 1037.142 kb on - strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.351 kb on + strand, within SM_b21372at 1037.352 kb on - strand, within SM_b21372at 1037.352 kb on - strand, within SM_b21372at 1037.352 kb on - strand, within SM_b21372at 1037.452 kb on + strand, within SM_b21372at 1037.453 kb on - strand, within SM_b21372at 1037.510 kb on + strandat 1037.511 kb on - strandat 1037.819 kb on + strandat 1037.928 kb on - strand, within SM_b21373at 1037.944 kb on - strand, within SM_b21373at 1037.945 kb on + strand, within SM_b21373at 1037.993 kb on + strand, within SM_b21373at 1037.994 kb on - strand, within SM_b21373at 1038.278 kb on + strandat 1038.279 kb on - strand, within SM_b21373at 1038.436 kb on + strandat 1038.437 kb on - strand, within SM_b21373at 1038.437 kb on - strand, within SM_b21373at 1038.644 kb on + strand, within SM_b21373at 1038.645 kb on - strand, within SM_b21373at 1038.816 kb on - strand, within SM_b21373at 1039.392 kb on - strand, within SM_b21374at 1039.392 kb on - strand, within SM_b21374at 1039.410 kb on - strand, within SM_b21374at 1039.929 kb on + strandat 1039.930 kb on - strandat 1039.930 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol (C)
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1,036,716 - SM_b21372 0.16 -0.9
1,036,925 + SM_b21372 0.36 -0.6
1,036,925 + SM_b21372 0.36 -1.8
1,036,925 + SM_b21372 0.36 -1.7
1,036,925 + SM_b21372 0.36 -0.3
1,036,926 - SM_b21372 0.36 -0.5
1,036,926 - SM_b21372 0.36 -0.6
1,036,926 - SM_b21372 0.36 +0.4
1,036,982 + SM_b21372 0.41 -0.7
1,036,982 + SM_b21372 0.41 -1.7
1,036,982 + SM_b21372 0.41 -3.1
1,036,982 + SM_b21372 0.41 -1.2
1,036,983 - SM_b21372 0.41 -1.3
1,037,033 + SM_b21372 0.46 +0.3
1,037,034 - SM_b21372 0.46 -0.7
1,037,034 - SM_b21372 0.46 -1.6
1,037,034 - SM_b21372 0.46 -1.3
1,037,141 + SM_b21372 0.56 -0.3
1,037,141 + SM_b21372 0.56 -1.5
1,037,141 + SM_b21372 0.56 -0.4
1,037,142 - SM_b21372 0.56 -0.8
1,037,351 + SM_b21372 0.76 -1.0
1,037,351 + SM_b21372 0.76 -0.9
1,037,351 + SM_b21372 0.76 -2.3
1,037,351 + SM_b21372 0.76 -0.1
1,037,351 + SM_b21372 0.76 -3.0
1,037,351 + SM_b21372 0.76 -0.4
1,037,352 - SM_b21372 0.76 -1.4
1,037,352 - SM_b21372 0.76 -1.1
1,037,352 - SM_b21372 0.76 -3.3
1,037,452 + SM_b21372 0.86 -1.4
1,037,453 - SM_b21372 0.86 -1.3
1,037,510 + -0.0
1,037,511 - -0.8
1,037,819 + +2.3
1,037,928 - SM_b21373 0.17 -1.3
1,037,944 - SM_b21373 0.18 +0.3
1,037,945 + SM_b21373 0.18 -1.2
1,037,993 + SM_b21373 0.22 -1.3
1,037,994 - SM_b21373 0.22 -0.3
1,038,278 + +1.3
1,038,279 - SM_b21373 0.44 -1.3
1,038,436 + -0.3
1,038,437 - SM_b21373 0.56 -2.8
1,038,437 - SM_b21373 0.56 -0.5
1,038,644 + SM_b21373 0.72 +1.3
1,038,645 - SM_b21373 0.73 -0.0
1,038,816 - SM_b21373 0.86 +0.7
1,039,392 - SM_b21374 0.42 -1.0
1,039,392 - SM_b21374 0.42 -1.1
1,039,410 - SM_b21374 0.44 -0.4
1,039,929 + -0.9
1,039,930 - -1.0
1,039,930 - -1.0

Or see this region's nucleotide sequence