Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21372 and SM_b21373 are separated by 111 nucleotides SM_b21373 and SM_b21374 are separated by 2 nucleotides SM_b21374 and SM_b21375 are separated by 23 nucleotides
SM_b21372: SM_b21372 - LacI family transcriptional regulator, at 1,036,546 to 1,037,604
_b21372
SM_b21373: SM_b21373 - D-tagatose 6-phosphate 4-epimerase [EC:5.1.3.40] (from data) , at 1,037,716 to 1,038,996
_b21373
SM_b21374: SM_b21374 - tagatose kinase (EC 2.7.1.101) (from data) , at 1,038,999 to 1,039,940
_b21374
SM_b21375: SM_b21375 - sugar uptake ABC transporter permease, at 1,039,964 to 1,040,926
_b21375
Position (kb)
1037
1038
1039 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1036.716 kb on - strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.925 kb on + strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.926 kb on - strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.982 kb on + strand, within SM_b21372 at 1036.983 kb on - strand, within SM_b21372 at 1037.033 kb on + strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.034 kb on - strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.141 kb on + strand, within SM_b21372 at 1037.142 kb on - strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.351 kb on + strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.352 kb on - strand, within SM_b21372 at 1037.452 kb on + strand, within SM_b21372 at 1037.453 kb on - strand, within SM_b21372 at 1037.510 kb on + strand at 1037.511 kb on - strand at 1037.819 kb on + strand at 1037.928 kb on - strand, within SM_b21373 at 1037.944 kb on - strand, within SM_b21373 at 1037.945 kb on + strand, within SM_b21373 at 1037.993 kb on + strand, within SM_b21373 at 1037.994 kb on - strand, within SM_b21373 at 1038.278 kb on + strand at 1038.279 kb on - strand, within SM_b21373 at 1038.436 kb on + strand at 1038.437 kb on - strand, within SM_b21373 at 1038.437 kb on - strand, within SM_b21373 at 1038.644 kb on + strand, within SM_b21373 at 1038.645 kb on - strand, within SM_b21373 at 1038.816 kb on - strand, within SM_b21373 at 1039.392 kb on - strand, within SM_b21374 at 1039.392 kb on - strand, within SM_b21374 at 1039.410 kb on - strand, within SM_b21374 at 1039.929 kb on + strand at 1039.930 kb on - strand at 1039.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 1,036,716 - SM_b21372 0.16 -0.9 1,036,925 + SM_b21372 0.36 -0.6 1,036,925 + SM_b21372 0.36 -1.8 1,036,925 + SM_b21372 0.36 -1.7 1,036,925 + SM_b21372 0.36 -0.3 1,036,926 - SM_b21372 0.36 -0.5 1,036,926 - SM_b21372 0.36 -0.6 1,036,926 - SM_b21372 0.36 +0.4 1,036,982 + SM_b21372 0.41 -0.7 1,036,982 + SM_b21372 0.41 -1.7 1,036,982 + SM_b21372 0.41 -3.1 1,036,982 + SM_b21372 0.41 -1.2 1,036,983 - SM_b21372 0.41 -1.3 1,037,033 + SM_b21372 0.46 +0.3 1,037,034 - SM_b21372 0.46 -0.7 1,037,034 - SM_b21372 0.46 -1.6 1,037,034 - SM_b21372 0.46 -1.3 1,037,141 + SM_b21372 0.56 -0.3 1,037,141 + SM_b21372 0.56 -1.5 1,037,141 + SM_b21372 0.56 -0.4 1,037,142 - SM_b21372 0.56 -0.8 1,037,351 + SM_b21372 0.76 -1.0 1,037,351 + SM_b21372 0.76 -0.9 1,037,351 + SM_b21372 0.76 -2.3 1,037,351 + SM_b21372 0.76 -0.1 1,037,351 + SM_b21372 0.76 -3.0 1,037,351 + SM_b21372 0.76 -0.4 1,037,352 - SM_b21372 0.76 -1.4 1,037,352 - SM_b21372 0.76 -1.1 1,037,352 - SM_b21372 0.76 -3.3 1,037,452 + SM_b21372 0.86 -1.4 1,037,453 - SM_b21372 0.86 -1.3 1,037,510 + -0.0 1,037,511 - -0.8 1,037,819 + +2.3 1,037,928 - SM_b21373 0.17 -1.3 1,037,944 - SM_b21373 0.18 +0.3 1,037,945 + SM_b21373 0.18 -1.2 1,037,993 + SM_b21373 0.22 -1.3 1,037,994 - SM_b21373 0.22 -0.3 1,038,278 + +1.3 1,038,279 - SM_b21373 0.44 -1.3 1,038,436 + -0.3 1,038,437 - SM_b21373 0.56 -2.8 1,038,437 - SM_b21373 0.56 -0.5 1,038,644 + SM_b21373 0.72 +1.3 1,038,645 - SM_b21373 0.73 -0.0 1,038,816 - SM_b21373 0.86 +0.7 1,039,392 - SM_b21374 0.42 -1.0 1,039,392 - SM_b21374 0.42 -1.1 1,039,410 - SM_b21374 0.44 -0.4 1,039,929 + -0.9 1,039,930 - -1.0 1,039,930 - -1.0
Or see this region's nucleotide sequence