Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21706 and SM_b20636 are separated by 455 nucleotides SM_b20636 and SM_b21630 are separated by 262 nucleotides
SM_b21706: SM_b21706 - LacI family transcriptional regulator, at 1,655,215 to 1,656,018
_b21706
SM_b20636: SM_b20636 - transposase of insertion sequence ISRm19 protein, at 1,656,474 to 1,657,487
_b20636
SM_b21630: SM_b21630 - hypothetical protein, at 1,657,750 to 1,658,991
_b21630
Position (kb)
1656
1657
1658 Strain fitness (log2 ratio)
-1
0
1 at 1655.783 kb on + strand, within SM_b21706 at 1655.783 kb on + strand, within SM_b21706 at 1655.784 kb on - strand, within SM_b21706 at 1655.784 kb on - strand, within SM_b21706 at 1655.784 kb on - strand, within SM_b21706 at 1655.920 kb on + strand, within SM_b21706 at 1655.921 kb on - strand, within SM_b21706 at 1655.921 kb on - strand, within SM_b21706 at 1655.921 kb on - strand, within SM_b21706 at 1656.002 kb on + strand at 1656.002 kb on + strand at 1656.002 kb on + strand at 1656.002 kb on + strand at 1656.003 kb on - strand at 1656.003 kb on - strand at 1656.003 kb on - strand at 1656.382 kb on - strand at 1656.416 kb on + strand at 1656.417 kb on - strand at 1656.471 kb on - strand at 1656.471 kb on - strand at 1656.476 kb on - strand at 1657.627 kb on + strand at 1657.627 kb on + strand at 1657.696 kb on - strand at 1657.696 kb on - strand at 1657.700 kb on - strand at 1657.730 kb on - strand at 1657.730 kb on - strand at 1657.961 kb on + strand, within SM_b21630 at 1657.962 kb on - strand, within SM_b21630 at 1657.988 kb on + strand, within SM_b21630 at 1657.989 kb on - strand, within SM_b21630 at 1658.198 kb on + strand, within SM_b21630 at 1658.198 kb on + strand, within SM_b21630 at 1658.198 kb on + strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.199 kb on - strand, within SM_b21630 at 1658.283 kb on + strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.284 kb on - strand, within SM_b21630 at 1658.286 kb on - strand, within SM_b21630 at 1658.376 kb on - strand, within SM_b21630 at 1658.376 kb on - strand, within SM_b21630 at 1658.433 kb on - strand, within SM_b21630
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 1,655,783 + SM_b21706 0.71 -0.8 1,655,783 + SM_b21706 0.71 -0.2 1,655,784 - SM_b21706 0.71 -0.9 1,655,784 - SM_b21706 0.71 -0.2 1,655,784 - SM_b21706 0.71 -0.5 1,655,920 + SM_b21706 0.88 -1.4 1,655,921 - SM_b21706 0.88 -0.2 1,655,921 - SM_b21706 0.88 +0.1 1,655,921 - SM_b21706 0.88 +0.5 1,656,002 + +1.7 1,656,002 + -0.4 1,656,002 + -0.0 1,656,002 + -0.7 1,656,003 - +0.7 1,656,003 - +0.6 1,656,003 - +1.4 1,656,382 - -0.3 1,656,416 + +0.3 1,656,417 - +0.2 1,656,471 - +0.0 1,656,471 - -0.7 1,656,476 - +0.1 1,657,627 + -0.1 1,657,627 + -0.1 1,657,696 - +0.9 1,657,696 - -0.7 1,657,700 - -0.3 1,657,730 - -0.3 1,657,730 - +0.1 1,657,961 + SM_b21630 0.17 -0.9 1,657,962 - SM_b21630 0.17 -0.9 1,657,988 + SM_b21630 0.19 +0.1 1,657,989 - SM_b21630 0.19 +0.4 1,658,198 + SM_b21630 0.36 -1.0 1,658,198 + SM_b21630 0.36 +0.4 1,658,198 + SM_b21630 0.36 -0.6 1,658,199 - SM_b21630 0.36 -0.3 1,658,199 - SM_b21630 0.36 -0.7 1,658,199 - SM_b21630 0.36 +0.4 1,658,199 - SM_b21630 0.36 +1.4 1,658,283 + SM_b21630 0.43 -0.4 1,658,284 - SM_b21630 0.43 -0.6 1,658,284 - SM_b21630 0.43 -0.4 1,658,284 - SM_b21630 0.43 -1.1 1,658,286 - SM_b21630 0.43 -0.6 1,658,376 - SM_b21630 0.50 +0.4 1,658,376 - SM_b21630 0.50 +1.2 1,658,433 - SM_b21630 0.55 -0.8
Or see this region's nucleotide sequence