Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20017 and SM_b20018 are separated by 249 nucleotides SM_b20018 and SM_b20019 are separated by 91 nucleotides
SM_b20017: SM_b20017 - sugar ABC transporter ATP-binding protein, at 23,337 to 24,842
_b20017
SM_b20018: SM_b20018 - sugar ABC transporter substrate-binding protein, at 25,092 to 26,114
_b20018
SM_b20019: SM_b20019 - dihydrolipoamide succinyltransferase, at 26,206 to 27,342
_b20019
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1 at 24.473 kb on - strand, within SM_b20017 at 24.473 kb on - strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.592 kb on + strand, within SM_b20017 at 24.806 kb on - strand at 24.806 kb on - strand at 25.139 kb on - strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.144 kb on + strand at 25.145 kb on - strand at 25.145 kb on - strand at 25.220 kb on - strand, within SM_b20018 at 25.489 kb on + strand, within SM_b20018 at 25.653 kb on + strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.654 kb on - strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.732 kb on + strand, within SM_b20018 at 25.733 kb on - strand, within SM_b20018 at 25.880 kb on + strand, within SM_b20018 at 26.036 kb on + strand at 26.114 kb on + strand at 26.208 kb on - strand at 26.208 kb on - strand at 26.303 kb on + strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.304 kb on - strand at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.615 kb on - strand, within SM_b20019 at 26.622 kb on + strand, within SM_b20019 at 26.623 kb on - strand, within SM_b20019 at 26.718 kb on - strand, within SM_b20019 at 26.726 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.850 kb on + strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.851 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 26.888 kb on - strand, within SM_b20019 at 27.041 kb on + strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019 at 27.042 kb on - strand, within SM_b20019
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 24,473 - SM_b20017 0.75 +0.2 24,473 - SM_b20017 0.75 -0.1 24,592 + SM_b20017 0.83 -0.1 24,592 + SM_b20017 0.83 -0.8 24,592 + SM_b20017 0.83 -0.1 24,806 - +0.3 24,806 - +0.2 25,139 - -0.4 25,144 + +0.6 25,144 + -0.3 25,144 + +0.1 25,145 - -1.2 25,145 - -0.1 25,220 - SM_b20018 0.13 +0.2 25,489 + SM_b20018 0.39 +0.5 25,653 + SM_b20018 0.55 +0.1 25,654 - SM_b20018 0.55 +1.1 25,654 - SM_b20018 0.55 -1.1 25,654 - SM_b20018 0.55 +0.1 25,654 - SM_b20018 0.55 +0.3 25,732 + SM_b20018 0.63 +1.4 25,732 + SM_b20018 0.63 +0.3 25,732 + SM_b20018 0.63 +0.4 25,732 + SM_b20018 0.63 +0.5 25,733 - SM_b20018 0.63 +1.6 25,880 + SM_b20018 0.77 +0.2 26,036 + +0.9 26,114 + +0.8 26,208 - +0.0 26,208 - +0.0 26,303 + -0.1 26,304 - -0.2 26,304 - +0.7 26,304 - +0.1 26,615 - SM_b20019 0.36 -1.4 26,615 - SM_b20019 0.36 +0.2 26,615 - SM_b20019 0.36 -0.4 26,622 + SM_b20019 0.37 -0.9 26,623 - SM_b20019 0.37 -1.0 26,718 - SM_b20019 0.45 +0.2 26,726 + SM_b20019 0.46 +0.1 26,850 + SM_b20019 0.57 +0.2 26,850 + SM_b20019 0.57 +0.5 26,851 - SM_b20019 0.57 +0.1 26,851 - SM_b20019 0.57 +1.6 26,851 - SM_b20019 0.57 -0.4 26,888 - SM_b20019 0.60 -0.4 26,888 - SM_b20019 0.60 -0.1 27,041 + SM_b20019 0.73 -0.2 27,042 - SM_b20019 0.74 -0.9 27,042 - SM_b20019 0.74 +0.3
Or see this region's nucleotide sequence