Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14955

Experiment: Glucose (C) and nitrate (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with MOPS
3,346,108	-		PFLU_RS14950	0.39	-0.2
3,346,242	+		PFLU_RS14950	0.49	-0.2
3,346,242	+		PFLU_RS14950	0.49	-1.6
3,346,242	+		PFLU_RS14950	0.49	-1.2
3,346,243	-		PFLU_RS14950	0.49	-0.3
3,346,243	-		PFLU_RS14950	0.49	+0.1
3,346,247	+		PFLU_RS14950	0.49	-1.3
3,346,247	+		PFLU_RS14950	0.49	-2.5
3,346,248	-		PFLU_RS14950	0.49	-0.7
3,346,248	-		PFLU_RS14950	0.49	-0.9
3,346,318	-		PFLU_RS14950	0.54	+0.6
3,346,333	+		PFLU_RS14950	0.55	+0.1
3,346,334	-		PFLU_RS14950	0.55	+0.3
3,346,334	-		PFLU_RS14950	0.55	-0.9
3,346,334	-		PFLU_RS14950	0.55	-1.2
3,346,334	-		PFLU_RS14950	0.55	+0.4
3,346,334	-		PFLU_RS14950	0.55	+0.2
3,346,334	-		PFLU_RS14950	0.55	-1.5
3,346,368	+		PFLU_RS14950	0.58	+0.1
3,346,369	-		PFLU_RS14950	0.58	-0.3
3,346,369	-		PFLU_RS14950	0.58	-2.2
3,346,407	+		PFLU_RS14950	0.61	-0.6
3,346,408	-		PFLU_RS14950	0.61	+2.4
3,346,409	+		PFLU_RS14950	0.61	-1.0
3,346,409	+		PFLU_RS14950	0.61	-0.0
3,346,409	+		PFLU_RS14950	0.61	-0.1
3,346,416	+		PFLU_RS14950	0.61	-1.0
3,346,416	+		PFLU_RS14950	0.61	-0.5
3,346,416	+		PFLU_RS14950	0.61	+1.5
3,346,416	+		PFLU_RS14950	0.61	-0.9
3,346,439	+		PFLU_RS14950	0.63	-0.5
3,346,439	+		PFLU_RS14950	0.63	+0.1
3,346,440	-		PFLU_RS14950	0.63	+0.6
3,346,440	-		PFLU_RS14950	0.63	+1.1
3,346,440	-		PFLU_RS14950	0.63	+2.3
3,346,549	+		PFLU_RS14950	0.71	+0.8
3,346,550	-		PFLU_RS14950	0.71	-0.5
3,346,574	+		PFLU_RS14950	0.73	+0.3
3,346,574	+		PFLU_RS14950	0.73	-0.3
3,346,574	+		PFLU_RS14950	0.73	-0.6
3,346,574	+		PFLU_RS14950	0.73	-0.3
3,346,574	+		PFLU_RS14950	0.73	-1.4
3,346,575	-		PFLU_RS14950	0.73	+0.2
3,346,575	-		PFLU_RS14950	0.73	-1.3
3,346,692	+		PFLU_RS14950	0.82	-1.2
3,346,692	+		PFLU_RS14950	0.82	+0.8
3,346,692	+		PFLU_RS14950	0.82	-2.2
3,346,692	+		PFLU_RS14950	0.82	+1.5
3,346,693	-		PFLU_RS14950	0.82	+1.7
3,346,693	-		PFLU_RS14950	0.82	-0.0
3,346,742	+		PFLU_RS14950	0.85	+1.4
3,346,742	+		PFLU_RS14950	0.85	-0.2
3,346,742	+		PFLU_RS14950	0.85	-0.1
3,346,743	-		PFLU_RS14950	0.85	+2.7
3,346,743	-		PFLU_RS14950	0.85	-1.6
3,346,743	-		PFLU_RS14950	0.85	+2.1
3,346,743	-		PFLU_RS14950	0.85	+0.9
3,346,743	-		PFLU_RS14950	0.85	+0.9
3,346,743	-		PFLU_RS14950	0.85	-0.5
3,346,804	-		PFLU_RS14950	0.90	-0.0
3,346,909	-				+0.6
3,346,981	-				-0.2
3,347,014	+				+0.4
3,347,015	-				-0.3
3,347,015	-				-2.6
3,347,017	+				+0.7
3,347,018	-				-2.7
3,347,040	+				-0.3
3,347,041	-				-1.9
3,347,170	+		PFLU_RS14955	0.11	-1.0
3,347,171	-		PFLU_RS14955	0.11	+0.8
3,347,171	-		PFLU_RS14955	0.11	+0.1
3,347,240	+		PFLU_RS14955	0.16	-1.2
3,347,240	+		PFLU_RS14955	0.16	-0.2
3,347,241	-		PFLU_RS14955	0.16	+0.6
3,347,280	+		PFLU_RS14955	0.19	+0.1
3,347,362	+		PFLU_RS14955	0.25	+1.7
3,347,378	+		PFLU_RS14955	0.26	+2.2
3,347,564	+		PFLU_RS14955	0.39	+1.4
3,347,565	-		PFLU_RS14955	0.39	-0.5
3,347,565	-		PFLU_RS14955	0.39	+0.9
3,347,565	-		PFLU_RS14955	0.39	-0.6
3,347,568	+		PFLU_RS14955	0.39	+0.5
3,347,631	-		PFLU_RS14955	0.44	+0.2
3,347,631	-		PFLU_RS14955	0.44	+1.9
3,347,631	-		PFLU_RS14955	0.44	+0.8
3,347,631	-		PFLU_RS14955	0.44	+0.9
3,347,665	+		PFLU_RS14955	0.46	-0.3
3,347,665	+		PFLU_RS14955	0.46	-0.1
3,347,669	+		PFLU_RS14955	0.47	+2.4
3,347,669	+		PFLU_RS14955	0.47	+0.5
3,347,669	+		PFLU_RS14955	0.47	-2.6
3,347,669	+		PFLU_RS14955	0.47	-2.1
3,347,669	+		PFLU_RS14955	0.47	-0.6
3,347,670	-		PFLU_RS14955	0.47	-0.6
3,347,670	-		PFLU_RS14955	0.47	-1.7
3,347,670	-		PFLU_RS14955	0.47	-0.7
3,347,670	-		PFLU_RS14955	0.47	-3.1
3,347,670	-		PFLU_RS14955	0.47	+0.6
3,347,724	+		PFLU_RS14955	0.51	-1.0
3,347,724	+		PFLU_RS14955	0.51	-0.5
3,347,724	+		PFLU_RS14955	0.51	-2.9
3,347,724	+		PFLU_RS14955	0.51	-0.3
3,347,724	+		PFLU_RS14955	0.51	+0.5
3,347,725	-		PFLU_RS14955	0.51	-0.6
3,347,725	-		PFLU_RS14955	0.51	+0.4
3,347,725	-		PFLU_RS14955	0.51	+0.0
3,347,725	-		PFLU_RS14955	0.51	+0.5
3,347,824	+		PFLU_RS14955	0.58	-0.0
3,347,825	-		PFLU_RS14955	0.58	-0.5
3,347,825	-		PFLU_RS14955	0.58	+0.5
3,347,825	-		PFLU_RS14955	0.58	+0.7
3,347,825	-		PFLU_RS14955	0.58	+2.7
3,347,840	-		PFLU_RS14955	0.59	-0.3
3,347,840	-		PFLU_RS14955	0.59	-0.2
3,347,877	-		PFLU_RS14955	0.62	-0.7
3,347,920	+		PFLU_RS14955	0.65	+1.1
3,347,921	-		PFLU_RS14955	0.65	+0.5
3,347,921	-		PFLU_RS14955	0.65	+1.1
3,347,943	+		PFLU_RS14955	0.66	-1.0
3,347,943	+		PFLU_RS14955	0.66	+2.7
3,347,943	+		PFLU_RS14955	0.66	+1.1
3,347,943	+		PFLU_RS14955	0.66	+1.1
3,347,943	+		PFLU_RS14955	0.66	-0.6
3,347,943	+		PFLU_RS14955	0.66	+1.1
3,347,943	+		PFLU_RS14955	0.66	-2.5
3,347,943	+		PFLU_RS14955	0.66	+1.7
3,347,943	+		PFLU_RS14955	0.66	+1.4
3,347,943	+		PFLU_RS14955	0.66	-1.2
3,347,944	-		PFLU_RS14955	0.66	+0.2
3,347,944	-		PFLU_RS14955	0.66	+2.7
3,347,944	-		PFLU_RS14955	0.66	+0.5
3,347,944	-		PFLU_RS14955	0.66	-0.0
3,347,944	-		PFLU_RS14955	0.66	-0.5
3,347,944	-		PFLU_RS14955	0.66	+0.7
3,347,944	-		PFLU_RS14955	0.66	-1.3
3,347,960	+		PFLU_RS14955	0.68	+2.1
3,347,983	+		PFLU_RS14955	0.69	+1.5
3,347,983	+		PFLU_RS14955	0.69	-0.1
3,348,131	+		PFLU_RS14955	0.80	+2.7
3,348,131	+		PFLU_RS14955	0.80	+0.6
3,348,131	+		PFLU_RS14955	0.80	+0.4
3,348,187	+		PFLU_RS14955	0.84	-1.7
3,348,187	+		PFLU_RS14955	0.84	+1.6
3,348,187	+		PFLU_RS14955	0.84	+2.1
3,348,188	-		PFLU_RS14955	0.84	-0.8
3,348,188	-		PFLU_RS14955	0.84	-0.5
3,348,188	-		PFLU_RS14955	0.84	+0.7
3,348,188	-		PFLU_RS14955	0.84	+0.2
3,348,188	-		PFLU_RS14955	0.84	-0.3
3,348,346	-				+0.3
3,348,372	-				+0.1
3,348,533	+				+0.6
3,348,601	-				+2.1
3,348,605	-				-1.2
3,348,714	+				-0.6
3,348,715	-				+0.9
3,348,730	+				+2.1
3,348,730	+				+0.6
3,348,730	+				+0.9
3,348,730	+				-0.7
3,348,730	+				+1.1
3,348,731	-				+0.5
3,348,731	-				+0.4
3,348,731	-				+0.1
3,348,731	-				+1.5
3,348,731	-				+0.9
3,348,807	-		PFLU_RS14960	0.19	+0.5
3,348,876	+		PFLU_RS14960	0.28	+0.1
3,348,876	+		PFLU_RS14960	0.28	-0.5
3,348,876	+		PFLU_RS14960	0.28	+0.8
3,348,876	+		PFLU_RS14960	0.28	+0.2
3,348,998	+		PFLU_RS14960	0.43	+0.1
3,348,998	+		PFLU_RS14960	0.43	-0.1
3,348,998	+		PFLU_RS14960	0.43	+0.5
3,348,999	-		PFLU_RS14960	0.43	-0.6
3,348,999	-		PFLU_RS14960	0.43	-0.5
3,348,999	-		PFLU_RS14960	0.43	-0.5
3,348,999	-		PFLU_RS14960	0.43	+0.3
3,349,169	+		PFLU_RS14960	0.65	+2.1
3,349,169	+		PFLU_RS14960	0.65	-1.5
3,349,170	-		PFLU_RS14960	0.65	+0.4
3,349,213	-		PFLU_RS14960	0.71	+0.9
3,349,227	+		PFLU_RS14960	0.72	+1.1
3,349,228	-		PFLU_RS14960	0.73	-0.1
3,349,228	-		PFLU_RS14960	0.73	-0.1
3,349,287	+		PFLU_RS14960	0.80	+0.1
3,349,287	+		PFLU_RS14960	0.80	+1.1
3,349,287	+		PFLU_RS14960	0.80	-0.7
3,349,287	+		PFLU_RS14960	0.80	+0.9
3,349,288	-		PFLU_RS14960	0.80	+1.1
3,349,299	-		PFLU_RS14960	0.82	-0.6
3,349,299	-		PFLU_RS14960	0.82	+1.7
3,349,352	+		PFLU_RS14960	0.88	+0.7
3,349,352	+		PFLU_RS14960	0.88	-0.6
3,349,352	+		PFLU_RS14960	0.88	+2.1
3,349,352	+		PFLU_RS14960	0.88	+0.1
3,349,353	-		PFLU_RS14960	0.89	+1.1
3,349,353	-		PFLU_RS14960	0.89	-0.8
3,349,353	-		PFLU_RS14960	0.89	-0.6
3,349,353	-		PFLU_RS14960	0.89	+0.7
3,349,353	-		PFLU_RS14960	0.89	+1.7
3,349,353	-		PFLU_RS14960	0.89	-0.5
3,349,356	+		PFLU_RS14960	0.89	-1.1
3,349,357	-		PFLU_RS14960	0.89	+0.8
3,349,357	-		PFLU_RS14960	0.89	+0.1
3,349,370	+				+1.7
3,349,376	+				-0.3
3,349,377	-				-1.1