Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS09895

Experiment: Glucose (C) and nitrate (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glucose (C) and nitrate (N); with MOPS
2,179,679	+				+0.5
2,179,679	+				-0.3
2,179,679	+				-0.9
2,179,679	+				+0.1
2,179,679	+				-0.3
2,179,802	+		PFLU_RS09890	0.19	-0.2
2,179,802	+		PFLU_RS09890	0.19	-1.5
2,179,802	+		PFLU_RS09890	0.19	+1.1
2,179,802	+		PFLU_RS09890	0.19	+0.7
2,179,803	-		PFLU_RS09890	0.19	+0.4
2,179,814	-		PFLU_RS09890	0.20	+1.1
2,179,901	+		PFLU_RS09890	0.29	-0.1
2,179,902	-		PFLU_RS09890	0.29	+0.4
2,179,910	+		PFLU_RS09890	0.30	+0.2
2,179,980	-		PFLU_RS09890	0.36	+0.7
2,180,036	+		PFLU_RS09890	0.42	+0.3
2,180,037	-		PFLU_RS09890	0.42	-1.0
2,180,037	-		PFLU_RS09890	0.42	+0.8
2,180,039	+		PFLU_RS09890	0.42	+0.2
2,180,065	+		PFLU_RS09890	0.44	-1.1
2,180,076	-		PFLU_RS09890	0.46	+0.2
2,180,156	+		PFLU_RS09890	0.53	+1.2
2,180,157	-		PFLU_RS09890	0.53	+0.2
2,180,157	-		PFLU_RS09890	0.53	-0.7
2,180,157	-		PFLU_RS09890	0.53	-0.9
2,180,157	-		PFLU_RS09890	0.53	-1.1
2,180,157	-		PFLU_RS09890	0.53	+0.1
2,180,157	-		PFLU_RS09890	0.53	-1.5
2,180,161	-		PFLU_RS09890	0.54	-1.7
2,180,206	+		PFLU_RS09890	0.58	-0.3
2,180,265	+		PFLU_RS09890	0.64	-0.1
2,180,265	+		PFLU_RS09890	0.64	+1.7
2,180,265	+		PFLU_RS09890	0.64	+0.3
2,180,287	+		PFLU_RS09890	0.66	-0.1
2,180,287	+		PFLU_RS09890	0.66	-1.5
2,180,320	+		PFLU_RS09890	0.69	+0.8
2,180,321	-		PFLU_RS09890	0.69	+0.1
2,180,324	+		PFLU_RS09890	0.69	+1.8
2,180,324	+		PFLU_RS09890	0.69	+0.3
2,180,324	+		PFLU_RS09890	0.69	+0.9
2,180,324	+		PFLU_RS09890	0.69	-1.2
2,180,325	-		PFLU_RS09890	0.69	+0.4
2,180,325	-		PFLU_RS09890	0.69	+0.1
2,180,325	-		PFLU_RS09890	0.69	-1.8
2,180,411	+		PFLU_RS09890	0.78	+0.1
2,180,491	+		PFLU_RS09890	0.85	-0.2
2,180,618	+				-0.3
2,180,632	-				-0.5
2,180,632	-				-0.9
2,180,640	+				+1.2
2,180,650	+				+0.8
2,180,731	+				+2.2
2,180,731	+				-0.9
2,180,731	+				+2.1
2,180,731	+				+2.0
2,180,731	+				+0.7
2,180,732	-				-0.8
2,180,732	-				-1.3
2,180,736	-				+1.2
2,180,740	+				+0.5
2,180,740	+				+0.3
2,180,741	-				+0.4
2,180,840	-		PFLU_RS09895	0.13	+0.1
2,180,840	-		PFLU_RS09895	0.13	+0.2
2,180,840	-		PFLU_RS09895	0.13	+0.7
2,180,840	-		PFLU_RS09895	0.13	-0.5
2,180,898	-		PFLU_RS09895	0.17	-0.9
2,180,921	+		PFLU_RS09895	0.19	+0.1
2,180,921	+		PFLU_RS09895	0.19	-0.5
2,180,922	-		PFLU_RS09895	0.19	-0.9
2,180,922	-		PFLU_RS09895	0.19	+1.7
2,180,922	-		PFLU_RS09895	0.19	-0.6
2,180,984	+		PFLU_RS09895	0.23	-2.7
2,181,021	+		PFLU_RS09895	0.26	-0.5
2,181,021	+		PFLU_RS09895	0.26	-0.1
2,181,021	+		PFLU_RS09895	0.26	+0.4
2,181,021	+		PFLU_RS09895	0.26	-0.6
2,181,086	+		PFLU_RS09895	0.31	+0.6
2,181,086	+		PFLU_RS09895	0.31	+0.2
2,181,086	+		PFLU_RS09895	0.31	+0.9
2,181,086	+		PFLU_RS09895	0.31	-0.3
2,181,086	+		PFLU_RS09895	0.31	+0.9
2,181,086	+		PFLU_RS09895	0.31	+0.2
2,181,087	-		PFLU_RS09895	0.31	+1.1
2,181,087	-		PFLU_RS09895	0.31	-0.8
2,181,093	+		PFLU_RS09895	0.31	+1.1
2,181,093	+		PFLU_RS09895	0.31	-0.8
2,181,093	+		PFLU_RS09895	0.31	+0.6
2,181,093	+		PFLU_RS09895	0.31	-1.3
2,181,094	-		PFLU_RS09895	0.31	-1.3
2,181,122	+		PFLU_RS09895	0.33	-0.2
2,181,122	+		PFLU_RS09895	0.33	-1.4
2,181,122	+		PFLU_RS09895	0.33	+0.7
2,181,122	+		PFLU_RS09895	0.33	+1.7
2,181,122	+		PFLU_RS09895	0.33	-0.2
2,181,122	+		PFLU_RS09895	0.33	+0.3
2,181,122	+		PFLU_RS09895	0.33	+0.1
2,181,122	+		PFLU_RS09895	0.33	-0.5
2,181,122	+		PFLU_RS09895	0.33	+0.4
2,181,122	+		PFLU_RS09895	0.33	+0.3
2,181,122	+		PFLU_RS09895	0.33	-1.8
2,181,122	+		PFLU_RS09895	0.33	+1.1
2,181,122	+		PFLU_RS09895	0.33	+1.7
2,181,123	-		PFLU_RS09895	0.33	+0.1
2,181,123	-		PFLU_RS09895	0.33	-1.6
2,181,123	-		PFLU_RS09895	0.33	+0.7
2,181,163	+		PFLU_RS09895	0.36	-1.2
2,181,187	+		PFLU_RS09895	0.38	-0.3
2,181,188	-		PFLU_RS09895	0.38	+1.5
2,181,210	+		PFLU_RS09895	0.39	-2.7
2,181,210	+		PFLU_RS09895	0.39	-0.4
2,181,210	+		PFLU_RS09895	0.39	-0.2
2,181,210	+		PFLU_RS09895	0.39	-0.3
2,181,211	-		PFLU_RS09895	0.39	+0.2
2,181,211	-		PFLU_RS09895	0.39	+0.8
2,181,250	+		PFLU_RS09895	0.42	+0.2
2,181,250	+		PFLU_RS09895	0.42	-1.0
2,181,250	+		PFLU_RS09895	0.42	+1.3
2,181,250	+		PFLU_RS09895	0.42	-0.1
2,181,250	+		PFLU_RS09895	0.42	-0.8
2,181,251	-		PFLU_RS09895	0.42	-1.8
2,181,251	-		PFLU_RS09895	0.42	-1.5
2,181,251	-		PFLU_RS09895	0.42	-2.1
2,181,317	+		PFLU_RS09895	0.47	-0.1
2,181,317	+		PFLU_RS09895	0.47	-0.2
2,181,317	+		PFLU_RS09895	0.47	-1.1
2,181,317	+		PFLU_RS09895	0.47	+1.2
2,181,373	+		PFLU_RS09895	0.51	-0.1
2,181,373	+		PFLU_RS09895	0.51	+1.7
2,181,373	+		PFLU_RS09895	0.51	+0.1
2,181,373	+		PFLU_RS09895	0.51	+0.4
2,181,373	+		PFLU_RS09895	0.51	+0.2
2,181,373	+		PFLU_RS09895	0.51	-1.0
2,181,373	+		PFLU_RS09895	0.51	-1.1
2,181,373	+		PFLU_RS09895	0.51	-1.1
2,181,374	-		PFLU_RS09895	0.51	+1.7
2,181,374	-		PFLU_RS09895	0.51	-0.9
2,181,374	-		PFLU_RS09895	0.51	-0.3
2,181,410	-		PFLU_RS09895	0.53	+0.5
2,181,410	-		PFLU_RS09895	0.53	-0.1
2,181,522	+		PFLU_RS09895	0.61	+0.9
2,181,522	+		PFLU_RS09895	0.61	-0.3
2,181,522	+		PFLU_RS09895	0.61	+0.5
2,181,522	+		PFLU_RS09895	0.61	-0.7
2,181,523	-		PFLU_RS09895	0.61	-0.2
2,181,523	-		PFLU_RS09895	0.61	+2.2
2,181,523	-		PFLU_RS09895	0.61	-0.3
2,181,553	+		PFLU_RS09895	0.64	+0.5
2,181,553	+		PFLU_RS09895	0.64	+0.2
2,181,568	+		PFLU_RS09895	0.65	-0.6
2,181,568	+		PFLU_RS09895	0.65	+1.7
2,181,646	+		PFLU_RS09895	0.70	+0.1
2,181,649	+		PFLU_RS09895	0.70	+0.1
2,181,649	+		PFLU_RS09895	0.70	-1.0
2,181,650	-		PFLU_RS09895	0.70	-0.3
2,181,650	-		PFLU_RS09895	0.70	-0.3
2,181,650	-		PFLU_RS09895	0.70	+0.5
2,181,650	-		PFLU_RS09895	0.70	-0.3
2,181,711	+		PFLU_RS09895	0.75	+3.2
2,181,711	+		PFLU_RS09895	0.75	+1.1
2,181,719	+		PFLU_RS09895	0.75	-1.3
2,181,720	-		PFLU_RS09895	0.75	-2.8
2,181,761	+		PFLU_RS09895	0.78	-0.9
2,181,784	+		PFLU_RS09895	0.80	-1.1
2,181,785	-		PFLU_RS09895	0.80	+0.1
2,181,809	-		PFLU_RS09895	0.82	+1.7
2,181,982	-				+0.2
2,182,017	+				+0.6
2,182,055	+				-0.1
2,182,055	+				+0.4
2,182,077	+				-1.3
2,182,182	-				-0.4
2,182,182	-				+1.7
2,182,283	+				+1.1
2,182,317	-				-0.5
2,182,367	+				+0.7
2,182,367	+				+0.7
2,182,367	+				-0.1
2,182,462	+		PFLU_RS09900	0.11	+1.4
2,182,462	+		PFLU_RS09900	0.11	+0.2
2,182,465	-		PFLU_RS09900	0.11	+0.1
2,182,465	-		PFLU_RS09900	0.11	-0.5
2,182,503	+		PFLU_RS09900	0.14	-2.7
2,182,503	+		PFLU_RS09900	0.14	+0.1
2,182,534	+		PFLU_RS09900	0.16	+1.1
2,182,535	-		PFLU_RS09900	0.16	-1.1
2,182,565	-		PFLU_RS09900	0.18	+0.1
2,182,590	+		PFLU_RS09900	0.20	-1.7
2,182,629	+		PFLU_RS09900	0.23	+0.1
2,182,657	+		PFLU_RS09900	0.25	-0.3
2,182,672	+		PFLU_RS09900	0.26	-0.3
2,182,709	+		PFLU_RS09900	0.29	-0.8
2,182,709	+		PFLU_RS09900	0.29	+0.9
2,182,709	+		PFLU_RS09900	0.29	+0.2
2,182,709	+		PFLU_RS09900	0.29	-1.7
2,182,709	+		PFLU_RS09900	0.29	-0.9
2,182,713	-		PFLU_RS09900	0.29	+1.7
2,182,837	-		PFLU_RS09900	0.38	-2.0
2,182,837	-		PFLU_RS09900	0.38	-0.3
2,182,837	-		PFLU_RS09900	0.38	-1.9
2,182,838	+		PFLU_RS09900	0.38	+1.9