Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27660 and BWI76_RS27665 overlap by 1 nucleotides BWI76_RS27665 and BWI76_RS27670 are separated by 102 nucleotides BWI76_RS27670 and BWI76_RS27675 overlap by 4 nucleotides
BWI76_RS27660: BWI76_RS27660 - hypothetical protein, at 5,738,876 to 5,739,346
_RS27660
BWI76_RS27665: BWI76_RS27665 - phosphatase, at 5,739,346 to 5,739,972
_RS27665
BWI76_RS27670: BWI76_RS27670 - LysR family transcriptional regulator, at 5,740,075 to 5,740,989
_RS27670
BWI76_RS27675: BWI76_RS27675 - EmrB/QacA family drug resistance transporter, at 5,740,986 to 5,742,482
_RS27675
Position (kb) 5740
5741 Strain fitness (log2 ratio) -2
-1
0
1 at 5739.125 kb on - strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.228 kb on + strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.236 kb on - strand, within BWI76_RS27660 at 5739.261 kb on - strand, within BWI76_RS27660 at 5739.319 kb on - strand at 5739.425 kb on + strand, within BWI76_RS27665 at 5739.428 kb on - strand, within BWI76_RS27665 at 5739.442 kb on + strand, within BWI76_RS27665 at 5739.452 kb on + strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand, within BWI76_RS27665 at 5739.460 kb on - strand at 5739.484 kb on - strand, within BWI76_RS27665 at 5739.494 kb on - strand, within BWI76_RS27665 at 5739.541 kb on - strand, within BWI76_RS27665 at 5739.586 kb on + strand, within BWI76_RS27665 at 5739.591 kb on + strand, within BWI76_RS27665 at 5739.683 kb on + strand, within BWI76_RS27665 at 5739.723 kb on + strand, within BWI76_RS27665 at 5739.810 kb on + strand, within BWI76_RS27665 at 5739.968 kb on + strand at 5740.167 kb on - strand, within BWI76_RS27670 at 5740.297 kb on + strand, within BWI76_RS27670 at 5740.356 kb on + strand, within BWI76_RS27670 at 5740.453 kb on - strand, within BWI76_RS27670 at 5740.884 kb on + strand, within BWI76_RS27670 at 5740.884 kb on + strand, within BWI76_RS27670 at 5740.910 kb on + strand at 5740.918 kb on - strand at 5740.968 kb on + strand at 5740.999 kb on + strand at 5741.031 kb on - strand at 5741.141 kb on - strand, within BWI76_RS27675 at 5741.217 kb on + strand, within BWI76_RS27675 at 5741.287 kb on - strand, within BWI76_RS27675 at 5741.296 kb on + strand, within BWI76_RS27675 at 5741.304 kb on - strand, within BWI76_RS27675 at 5741.417 kb on - strand, within BWI76_RS27675 at 5741.556 kb on + strand, within BWI76_RS27675 at 5741.561 kb on + strand, within BWI76_RS27675 at 5741.584 kb on + strand, within BWI76_RS27675 at 5741.594 kb on + strand, within BWI76_RS27675 at 5741.841 kb on + strand, within BWI76_RS27675
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,739,125 - BWI76_RS27660 0.53 -0.1 5,739,228 + BWI76_RS27660 0.75 +0.4 5,739,228 + BWI76_RS27660 0.75 -1.5 5,739,228 + BWI76_RS27660 0.75 +0.8 5,739,228 + BWI76_RS27660 0.75 -0.7 5,739,236 - BWI76_RS27660 0.76 +1.2 5,739,236 - BWI76_RS27660 0.76 +0.3 5,739,236 - BWI76_RS27660 0.76 +0.5 5,739,236 - BWI76_RS27660 0.76 +0.3 5,739,261 - BWI76_RS27660 0.82 +0.6 5,739,319 - +1.1 5,739,425 + BWI76_RS27665 0.13 -2.1 5,739,428 - BWI76_RS27665 0.13 +0.6 5,739,442 + BWI76_RS27665 0.15 +1.2 5,739,452 + BWI76_RS27665 0.17 +0.8 5,739,460 - BWI76_RS27665 0.18 +0.9 5,739,460 - BWI76_RS27665 0.18 +0.1 5,739,460 - +0.1 5,739,484 - BWI76_RS27665 0.22 +0.4 5,739,494 - BWI76_RS27665 0.24 -0.7 5,739,541 - BWI76_RS27665 0.31 -0.6 5,739,586 + BWI76_RS27665 0.38 +0.1 5,739,591 + BWI76_RS27665 0.39 -0.2 5,739,683 + BWI76_RS27665 0.54 +0.2 5,739,723 + BWI76_RS27665 0.60 -1.9 5,739,810 + BWI76_RS27665 0.74 -0.5 5,739,968 + -0.5 5,740,167 - BWI76_RS27670 0.10 -2.1 5,740,297 + BWI76_RS27670 0.24 +1.1 5,740,356 + BWI76_RS27670 0.31 +1.1 5,740,453 - BWI76_RS27670 0.41 +0.3 5,740,884 + BWI76_RS27670 0.88 +0.9 5,740,884 + BWI76_RS27670 0.88 +0.7 5,740,910 + +0.4 5,740,918 - -1.1 5,740,968 + -0.5 5,740,999 + -1.7 5,741,031 - +0.2 5,741,141 - BWI76_RS27675 0.10 +1.6 5,741,217 + BWI76_RS27675 0.15 +0.1 5,741,287 - BWI76_RS27675 0.20 +0.7 5,741,296 + BWI76_RS27675 0.21 +0.4 5,741,304 - BWI76_RS27675 0.21 +0.1 5,741,417 - BWI76_RS27675 0.29 +1.2 5,741,556 + BWI76_RS27675 0.38 -1.5 5,741,561 + BWI76_RS27675 0.38 -0.3 5,741,584 + BWI76_RS27675 0.40 +0.0 5,741,594 + BWI76_RS27675 0.41 +0.2 5,741,841 + BWI76_RS27675 0.57 +0.9
Or see this region's nucleotide sequence