Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26610 and BWI76_RS26615 are separated by 209 nucleotides BWI76_RS26615 and BWI76_RS26620 are separated by 331 nucleotides BWI76_RS26620 and BWI76_RS26625 are separated by 58 nucleotides
BWI76_RS26610: BWI76_RS26610 - oligopeptidase A, at 5,507,801 to 5,509,843
_RS26610
BWI76_RS26615: BWI76_RS26615 - gluconate:H+ symporter (from data) , at 5,510,053 to 5,511,369
_RS26615
BWI76_RS26620: BWI76_RS26620 - Fe-S biogenesis protein NfuA, at 5,511,701 to 5,512,276
_RS26620
BWI76_RS26625: BWI76_RS26625 - gluconate transporter periplasmic gluconate-binding protein, at 5,512,335 to 5,513,009
_RS26625
Position (kb)
5510
5511
5512 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5509.142 kb on - strand, within BWI76_RS26610 at 5509.153 kb on + strand, within BWI76_RS26610 at 5509.311 kb on + strand, within BWI76_RS26610 at 5509.351 kb on - strand, within BWI76_RS26610 at 5509.412 kb on - strand, within BWI76_RS26610 at 5509.473 kb on + strand, within BWI76_RS26610 at 5509.473 kb on + strand, within BWI76_RS26610 at 5509.473 kb on + strand, within BWI76_RS26610 at 5509.478 kb on - strand, within BWI76_RS26610 at 5509.480 kb on + strand, within BWI76_RS26610 at 5509.483 kb on - strand, within BWI76_RS26610 at 5509.492 kb on - strand, within BWI76_RS26610 at 5509.515 kb on - strand, within BWI76_RS26610 at 5509.538 kb on - strand, within BWI76_RS26610 at 5509.708 kb on - strand at 5509.773 kb on + strand at 5509.854 kb on + strand at 5510.041 kb on - strand at 5510.082 kb on + strand at 5510.127 kb on + strand at 5510.368 kb on + strand, within BWI76_RS26615 at 5510.438 kb on - strand, within BWI76_RS26615 at 5510.629 kb on + strand, within BWI76_RS26615 at 5510.667 kb on + strand, within BWI76_RS26615 at 5510.687 kb on + strand, within BWI76_RS26615 at 5510.844 kb on + strand, within BWI76_RS26615 at 5510.848 kb on + strand, within BWI76_RS26615 at 5510.922 kb on - strand, within BWI76_RS26615 at 5511.026 kb on + strand, within BWI76_RS26615 at 5511.031 kb on + strand, within BWI76_RS26615 at 5511.253 kb on - strand at 5511.370 kb on + strand at 5511.658 kb on - strand at 5511.659 kb on + strand at 5511.664 kb on - strand at 5512.114 kb on - strand, within BWI76_RS26620 at 5512.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 5,509,142 - BWI76_RS26610 0.66 -1.1 5,509,153 + BWI76_RS26610 0.66 -0.2 5,509,311 + BWI76_RS26610 0.74 -0.4 5,509,351 - BWI76_RS26610 0.76 +0.9 5,509,412 - BWI76_RS26610 0.79 -0.7 5,509,473 + BWI76_RS26610 0.82 +0.4 5,509,473 + BWI76_RS26610 0.82 +1.1 5,509,473 + BWI76_RS26610 0.82 +0.2 5,509,478 - BWI76_RS26610 0.82 -0.6 5,509,480 + BWI76_RS26610 0.82 +0.7 5,509,483 - BWI76_RS26610 0.82 -3.0 5,509,492 - BWI76_RS26610 0.83 +0.7 5,509,515 - BWI76_RS26610 0.84 +0.5 5,509,538 - BWI76_RS26610 0.85 +0.6 5,509,708 - +0.5 5,509,773 + +2.7 5,509,854 + -1.4 5,510,041 - +0.5 5,510,082 + -0.5 5,510,127 + +0.0 5,510,368 + BWI76_RS26615 0.24 -0.3 5,510,438 - BWI76_RS26615 0.29 -0.1 5,510,629 + BWI76_RS26615 0.44 -0.5 5,510,667 + BWI76_RS26615 0.47 -0.1 5,510,687 + BWI76_RS26615 0.48 -1.7 5,510,844 + BWI76_RS26615 0.60 -0.2 5,510,848 + BWI76_RS26615 0.60 -0.5 5,510,922 - BWI76_RS26615 0.66 -0.3 5,511,026 + BWI76_RS26615 0.74 -1.1 5,511,031 + BWI76_RS26615 0.74 -1.5 5,511,253 - -1.4 5,511,370 + -1.5 5,511,658 - +1.1 5,511,659 + +0.7 5,511,664 - -0.2 5,512,114 - BWI76_RS26620 0.72 +0.7 5,512,362 - +0.3
Or see this region's nucleotide sequence