Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23890 and BWI76_RS23895 overlap by 4 nucleotides BWI76_RS23895 and BWI76_RS23900 are separated by 28 nucleotides BWI76_RS23900 and BWI76_RS23905 are separated by 159 nucleotides
BWI76_RS23890: BWI76_RS23890 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 4,986,629 to 4,987,807
_RS23890
BWI76_RS23895: BWI76_RS23895 - Xaa-Pro aminopeptidase, at 4,987,804 to 4,989,120
_RS23895
BWI76_RS23900: BWI76_RS23900 - hypothetical protein, at 4,989,149 to 4,989,733
_RS23900
BWI76_RS23905: BWI76_RS23905 - Z-ring-associated protein, at 4,989,893 to 4,990,222
_RS23905
Position (kb) 4987
4988
4989
4990 Strain fitness (log2 ratio) -1
0
1
2 at 4987.969 kb on - strand, within BWI76_RS23895 at 4988.406 kb on - strand, within BWI76_RS23895 at 4988.824 kb on - strand, within BWI76_RS23895 at 4989.135 kb on - strand at 4989.254 kb on - strand, within BWI76_RS23900 at 4989.317 kb on - strand, within BWI76_RS23900 at 4989.661 kb on - strand, within BWI76_RS23900 at 4989.726 kb on - strand at 4989.726 kb on - strand at 4989.780 kb on - strand at 4989.815 kb on - strand at 4989.828 kb on + strand at 4989.964 kb on - strand, within BWI76_RS23905 at 4989.968 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.976 kb on - strand, within BWI76_RS23905
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,987,969 - BWI76_RS23895 0.13 +2.2 4,988,406 - BWI76_RS23895 0.46 +1.0 4,988,824 - BWI76_RS23895 0.77 +1.6 4,989,135 - +1.0 4,989,254 - BWI76_RS23900 0.18 -0.1 4,989,317 - BWI76_RS23900 0.29 +0.5 4,989,661 - BWI76_RS23900 0.88 -1.0 4,989,726 - +0.2 4,989,726 - -0.3 4,989,780 - +0.1 4,989,815 - -0.1 4,989,828 + +0.2 4,989,964 - BWI76_RS23905 0.22 -0.7 4,989,968 + BWI76_RS23905 0.23 -0.6 4,989,969 + BWI76_RS23905 0.23 -1.0 4,989,969 + BWI76_RS23905 0.23 -0.2 4,989,976 - BWI76_RS23905 0.25 +0.6
Or see this region's nucleotide sequence