Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22080 and BWI76_RS22085 overlap by 11 nucleotides BWI76_RS22085 and BWI76_RS22090 are separated by 91 nucleotides BWI76_RS22090 and BWI76_RS22095 are separated by 131 nucleotides
BWI76_RS22080: BWI76_RS22080 - AzlC family protein, at 4,609,989 to 4,610,735
_RS22080
BWI76_RS22085: BWI76_RS22085 - L-valine transporter subunit YgaH, at 4,610,725 to 4,611,060
_RS22085
BWI76_RS22090: BWI76_RS22090 - transcriptional regulator, at 4,611,152 to 4,611,682
_RS22090
BWI76_RS22095: BWI76_RS22095 - multidrug export protein EmrA, at 4,611,814 to 4,612,986
_RS22095
Position (kb)
4611
4612 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4610.281 kb on - strand, within BWI76_RS22080 at 4610.350 kb on + strand, within BWI76_RS22080 at 4610.360 kb on - strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.433 kb on + strand, within BWI76_RS22080 at 4610.523 kb on + strand, within BWI76_RS22080 at 4610.538 kb on - strand, within BWI76_RS22080 at 4610.557 kb on - strand, within BWI76_RS22080 at 4610.663 kb on + strand at 4610.697 kb on + strand at 4610.699 kb on - strand at 4610.710 kb on - strand at 4610.737 kb on + strand at 4610.964 kb on - strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.016 kb on + strand, within BWI76_RS22085 at 4611.504 kb on + strand, within BWI76_RS22090 at 4611.570 kb on + strand, within BWI76_RS22090 at 4611.615 kb on + strand, within BWI76_RS22090 at 4611.683 kb on + strand at 4612.093 kb on - strand at 4612.204 kb on - strand, within BWI76_RS22095 at 4612.390 kb on - strand, within BWI76_RS22095
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x remove 4,610,281 - BWI76_RS22080 0.39 +0.3 4,610,350 + BWI76_RS22080 0.48 +0.4 4,610,360 - BWI76_RS22080 0.50 -0.2 4,610,433 + BWI76_RS22080 0.59 +0.6 4,610,433 + BWI76_RS22080 0.59 +0.6 4,610,523 + BWI76_RS22080 0.71 +0.0 4,610,538 - BWI76_RS22080 0.73 -0.8 4,610,557 - BWI76_RS22080 0.76 -1.0 4,610,663 + +0.1 4,610,697 + -0.4 4,610,699 - +0.1 4,610,710 - -0.3 4,610,737 + -2.6 4,610,964 - BWI76_RS22085 0.71 -2.8 4,611,016 + BWI76_RS22085 0.87 -0.3 4,611,016 + BWI76_RS22085 0.87 +0.2 4,611,504 + BWI76_RS22090 0.66 -1.8 4,611,570 + BWI76_RS22090 0.79 -2.3 4,611,615 + BWI76_RS22090 0.87 +0.0 4,611,683 + -1.5 4,612,093 - +1.0 4,612,204 - BWI76_RS22095 0.33 +0.7 4,612,390 - BWI76_RS22095 0.49 +0.0
Or see this region's nucleotide sequence