Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16080

Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16075 and BWI76_RS16080 are separated by 107 nucleotidesBWI76_RS16080 and BWI76_RS16085 are separated by 107 nucleotides BWI76_RS16075: BWI76_RS16075 - oxidoreductase, at 3,333,370 to 3,334,110 _RS16075 BWI76_RS16080: BWI76_RS16080 - LysR family transcriptional regulator, at 3,334,218 to 3,335,114 _RS16080 BWI76_RS16085: BWI76_RS16085 - two-component system sensor histidine kinase DcuS, at 3,335,222 to 3,336,841 _RS16085 Position (kb) 3334 3335 3336Strain fitness (log2 ratio) -2 -1 0 1at 3333.291 kb on + strandat 3333.299 kb on - strandat 3333.926 kb on - strand, within BWI76_RS16075at 3334.261 kb on + strandat 3334.356 kb on + strand, within BWI76_RS16080at 3334.807 kb on - strand, within BWI76_RS16080at 3334.856 kb on - strand, within BWI76_RS16080at 3335.359 kb on + strandat 3335.919 kb on + strand, within BWI76_RS16085at 3335.981 kb on - strand, within BWI76_RS16085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x
remove
3,333,291 + +1.1
3,333,299 - -0.5
3,333,926 - BWI76_RS16075 0.75 +0.4
3,334,261 + +0.2
3,334,356 + BWI76_RS16080 0.15 +0.9
3,334,807 - BWI76_RS16080 0.66 +0.7
3,334,856 - BWI76_RS16080 0.71 +0.8
3,335,359 + +0.5
3,335,919 + BWI76_RS16085 0.43 -2.1
3,335,981 - BWI76_RS16085 0.47 +0.2

Or see this region's nucleotide sequence